Protein

View in Explore
Genbank accession
XCO69248.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MALKTKIIVQQILNIDDTTTTASKYPKYTVVLGSSISSITAGELTAAVEATAASAAAAKDSEIAAKDSENKAKDSENMAGIYATSSETSATQSAASAAEAKKQASLSQKSAEASATSAEESKGLRDSAELAAQNAETSRRLAEQAKTAAQQAQTAAEAAKTGAETAKDGADAAATTAGEHAAAAKQSELNAKISETNAAGSATEAGDKANDATTEADRAKAEADRATQIVDSKLDKVDISGFIKVYKTKAEADADVVNRVLDEKVLVWNQTDSKYGWYKVAGTTEAPVLELVEIEQKLVSINNVHADDAGNVQITLPGGNPSLWLGEVTWFPYNKDSGVGYPGVLPADGREVLRVDYPDTWEAIEAGLIPSVSEAEWQAGASLYFSTGDGSTTFRLPDMMQGQAFRAPTKGEEDAGAIKEQIPYITTVNGIGPADDTGAIKLPYVAMVNGAIIPDENGNLTLGNVVTKNVWNGTDGEVLLRGAFGLGGAGIALNEPDIVSFFKAMRAFGSGYYRNDTGFDGLPAYAAGFYSRVADTNSFICPAYGSASVFVAAINDGVLDSENPIVHTNILYGTVNKPDLNGDTNGVLSVGKGGTGATTVNAAKKALEVGGVFCNDSPADAAFNSLQSPAGIHEFRLTNDGLWGVWKNGEETVAALPIGSGGTGATDKVAARDNFGLGYHNTPRFTGIDLSNPESIPNSGILNLNRLKESDQNVITQGRIYHEIQSGLAKITLHINNTLNSANRYIQFVENGDLTGLQDVHAANYLASAGVISQGWIKGGEKIFIQQTGGGNREISMVVPTPNNDPGAGSWVNLLQGNWYNGYWQVGGIRGSGPDLDCFRIGVNNAGTDWKEFNFYNSSGGHITAQRGFRGQCIQGSWGLEWNYMGAPFHAESVINNDGGWSPFVSGGTVSTGGYSLRVGLGCISNGNAAWPDAALKLNGDGQFHRSFTFRTNGSIYTWGNDPWGGNYDIAMNPSSDRDIKRDINYDDGLASYENIKQFKPTTFIYKLDKYNRVRRGVIAQDLYKIDPEYVKLVPGSPIIETPEHHCCDEETENVEGKIIDYNDDTLALDINPIAIDTALAVRYLSLKFEESQEELKSVKAELAELKALVATLVNK
Physico‐chemical
properties
protein length:1116 AA
molecular weight: 118534,75970 Da
isoelectric point:4,76148
aromaticity:0,07975
hydropathy:-0,32294

Domains

Domains [InterPro]
DC_0608
ATT
2–577
DC_0608 IPR030392 Coil
Coil
Unmapped
202–229
Coil DC_0195
IPR030392
CHP
976–1096
IPR030392
XCO69248.1
1 1116
Architecture
ATT
STR
ATT 2-577 | STR 578-1116
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_Sen_TUMS_E3
[NCBI] 		3229529 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCO69248.1 [NCBI]
Genbank nucleotide accession
PP941779.1 [NCBI]
CDS location
range 33910 -> 37260
strand +
CDS
ATGGCACTTAAAACTAAAATTATTGTACAGCAGATCCTGAACATAGATGACACTACAACTACTGCTAGTAAGTATCCTAAATATACAGTAGTTTTAGGAAGTTCTATTAGCTCTATTACTGCTGGTGAATTAACTGCTGCTGTAGAAGCCACCGCTGCTTCTGCGGCAGCAGCAAAAGATTCTGAAATTGCTGCTAAAGATTCTGAGAATAAAGCAAAAGATTCAGAAAACATGGCTGGTATCTATGCTACTTCATCTGAAACATCTGCAACCCAATCAGCGGCATCTGCGGCCGAGGCTAAAAAACAAGCTAGTTTATCTCAGAAGAGTGCTGAAGCATCTGCTACATCGGCGGAAGAGTCTAAAGGACTTAGAGATTCTGCTGAATTAGCTGCTCAAAATGCTGAAACTAGTCGTAGGCTTGCAGAACAAGCTAAAACAGCTGCGCAACAAGCTCAAACAGCTGCAGAAGCTGCTAAGACTGGTGCTGAAACAGCTAAAGATGGAGCTGATGCTGCTGCTACCACTGCTGGCGAACATGCTGCTGCTGCAAAGCAATCAGAACTAAACGCTAAGATTTCTGAAACTAATGCTGCTGGTTCTGCTACTGAAGCCGGTGATAAAGCTAATGATGCTACTACTGAGGCAGATCGTGCTAAAGCTGAGGCAGATCGTGCAACTCAGATTGTTGATAGTAAACTTGATAAAGTAGATATTTCTGGTTTTATTAAAGTTTATAAGACTAAAGCAGAAGCTGATGCTGATGTTGTAAACCGTGTGCTAGACGAAAAGGTTCTAGTCTGGAATCAAACTGATTCAAAGTATGGTTGGTATAAAGTTGCTGGTACTACTGAAGCTCCTGTTCTAGAGTTAGTAGAAATAGAGCAAAAGCTAGTTTCTATTAACAACGTTCATGCAGACGATGCAGGTAACGTACAGATCACCCTTCCTGGTGGTAACCCGTCTCTGTGGCTAGGTGAAGTTACTTGGTTCCCTTATAACAAGGATTCAGGTGTTGGTTACCCTGGTGTTCTACCTGCTGATGGCCGTGAAGTTCTTCGTGTAGACTATCCAGATACTTGGGAGGCTATTGAGGCTGGCTTAATTCCTTCTGTATCAGAAGCTGAATGGCAAGCTGGTGCGTCTCTTTACTTCTCTACTGGGGATGGCTCTACAACCTTCCGTCTACCAGATATGATGCAAGGACAGGCATTCCGTGCACCAACTAAAGGTGAAGAAGATGCTGGTGCTATCAAAGAACAAATCCCTTATATCACTACTGTGAATGGGATTGGTCCTGCTGACGATACTGGAGCTATTAAGCTACCTTACGTGGCTATGGTTAACGGAGCTATTATACCAGATGAGAATGGTAACCTAACACTAGGTAACGTTGTTACTAAGAATGTTTGGAATGGTACTGATGGAGAAGTTCTACTTCGTGGTGCTTTTGGTTTAGGTGGTGCTGGTATTGCGTTAAATGAACCTGATATAGTATCATTTTTTAAGGCTATGAGAGCTTTTGGCTCTGGGTATTATCGCAATGATACTGGATTTGATGGCTTGCCTGCATACGCTGCAGGTTTCTACTCCAGGGTAGCAGATACTAACTCATTTATATGCCCAGCGTATGGTAGTGCTTCAGTATTTGTAGCTGCAATCAATGATGGTGTTTTAGATAGTGAAAACCCTATTGTTCATACTAATATTCTTTATGGTACTGTTAATAAGCCAGATCTAAATGGTGATACTAATGGAGTTCTTAGTGTTGGTAAAGGCGGTACTGGAGCTACCACAGTTAATGCTGCTAAGAAAGCTTTAGAAGTTGGTGGAGTTTTCTGTAATGATAGCCCAGCTGATGCTGCTTTCAACTCTCTCCAGAGCCCTGCTGGTATTCATGAGTTTAGACTAACTAATGATGGGTTATGGGGTGTATGGAAGAATGGGGAAGAAACGGTAGCTGCGTTGCCTATAGGCTCTGGAGGTACAGGAGCTACTGATAAAGTTGCTGCACGTGATAACTTTGGATTGGGGTATCATAATACTCCTAGATTTACTGGGATAGATCTATCTAACCCCGAAAGTATACCCAATAGTGGTATCCTTAACCTAAACAGGCTAAAGGAATCTGATCAAAATGTTATTACTCAGGGTAGAATCTATCATGAGATACAATCAGGCTTGGCTAAAATTACCCTTCATATTAACAATACTTTAAATAGTGCAAACCGTTACATACAGTTTGTAGAAAATGGTGATTTAACTGGGCTACAGGATGTACATGCTGCTAACTACCTTGCAAGTGCTGGTGTTATATCCCAGGGGTGGATTAAAGGCGGAGAAAAAATCTTCATACAGCAAACAGGCGGGGGCAACAGGGAAATTAGTATGGTTGTACCTACTCCTAATAATGACCCTGGTGCTGGTTCTTGGGTTAACTTACTACAGGGTAACTGGTATAACGGTTACTGGCAAGTAGGTGGTATCCGTGGTAGTGGACCGGACTTAGACTGCTTCCGTATTGGAGTTAACAACGCTGGTACAGATTGGAAAGAGTTTAACTTCTATAACTCTTCCGGTGGGCACATAACTGCTCAAAGAGGTTTTCGTGGTCAGTGTATTCAAGGATCTTGGGGCTTAGAGTGGAATTACATGGGTGCCCCGTTTCATGCAGAGTCTGTAATAAATAATGATGGTGGTTGGTCTCCATTTGTTTCTGGTGGTACTGTATCTACAGGAGGCTACTCACTACGTGTTGGGCTTGGATGTATTTCTAATGGTAACGCTGCATGGCCTGATGCTGCTCTTAAGTTAAATGGGGATGGCCAGTTCCACCGTTCATTCACCTTTAGAACAAATGGTAGCATATATACTTGGGGTAATGATCCTTGGGGAGGTAATTATGACATTGCTATGAACCCTTCTTCAGATAGAGATATCAAAAGAGATATTAATTATGATGATGGGTTAGCCTCCTATGAGAATATAAAGCAATTTAAGCCTACCACATTTATCTATAAACTAGATAAGTATAATCGTGTACGCCGTGGTGTTATTGCTCAAGATCTTTATAAAATTGACCCTGAGTACGTAAAACTGGTTCCTGGTTCTCCTATCATAGAAACTCCAGAACATCATTGCTGTGACGAAGAAACTGAAAACGTAGAAGGTAAGATCATTGATTACAATGATGATACTCTAGCCTTAGATATCAACCCAATTGCTATTGATACAGCTTTAGCAGTTCGTTACTTATCTCTAAAGTTCGAAGAGTCCCAGGAAGAACTGAAATCCGTTAAGGCAGAGCTGGCAGAGTTAAAAGCTCTAGTGGCTACTCTGGTAAATAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bb8a6e9b22ee236f5f894f9625528773c6205a07426a94ee002864035e783055
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5732
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization, and genome analysis of a new Salmonella phage vB_Sen_TUMS_E3 Torkashvand,N., Kamyab,H., Shahverdi,A.R. and Sepehrizadeh,Z. 2023-04-25 — GenBank