Protein

View in Explore
Genbank accession
XVB76546.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,55
Protein sequence
MATVNDPSFRFATNVFDTDGTDKVYNISFNLGYIEADYVVAMSGVEDPDTKLLTDMQAHVVSFIDDPAGMRVKVSPVPVADRKLVIFRQTDISKLLVRFQDGKLQTGRNLDLNSTQLIMAIQEILDGLRNNNLIVEQQINTVVDMNKVITEIYQQVIELLAAGGIVSVAPRVWSGAADPNEEDQTDWEIPGADVSGAGFYDTYRNGIGLEPDKDYVIILPTKDDPRSLIRFTEPFSDGEEWFTVLRGYAKPYTGPQPITTLAFPIRTYEGTTLFIDKASEFALVRCMNDNPITATVKLIPGTGDQMVSGSWINIAARGAGQVTLKGDPGVTLAVPAGLKAAARARNSVITLTCEDADTNVWLVSGDLALED
Physico‐chemical
properties
protein length:371 AA
molecular weight: 40516,38100 Da
isoelectric point:4,43892
aromaticity:0,07817
hydropathy:-0,07170

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XVB76546.1
1 371
Domain Start End Length (AA) Confidence
N-terminal 1 272 272 0,9618
Central domain 273 360 89 0,0056
C-terminal 361 371 10 0,9943
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-272
Central
273-360
C-terminal
361-371

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage BUCT799
[NCBI] 		3434656 Viruses >
Host Stenotrophomonas sp.
[NCBI] 		69392 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XVB76546.1 [NCBI]
Genbank nucleotide accession
PV714881.1 [NCBI]
CDS location
range 38819 -> 39934
strand -
CDS
ATGGCGACTGTCAACGATCCGTCGTTCCGGTTTGCTACCAACGTGTTCGACACTGATGGTACCGACAAGGTTTACAACATCAGTTTCAACCTCGGCTACATCGAGGCGGATTACGTTGTCGCAATGTCGGGCGTCGAAGACCCGGACACCAAGCTGCTGACCGACATGCAGGCCCACGTTGTGAGCTTCATTGACGACCCGGCAGGTATGCGTGTCAAGGTATCGCCGGTCCCGGTGGCTGACCGTAAGCTGGTCATCTTCCGTCAGACCGACATCAGCAAGCTGCTGGTCCGCTTCCAAGACGGTAAGCTCCAGACCGGGCGCAACCTCGACCTGAACTCGACCCAGCTTATCATGGCGATTCAGGAAATCCTCGACGGGCTGCGTAACAACAACCTGATCGTGGAGCAGCAGATCAACACCGTCGTGGACATGAACAAGGTCATCACTGAGATTTATCAGCAGGTGATCGAGCTTCTGGCCGCAGGCGGTATCGTGTCCGTTGCACCTCGCGTGTGGTCCGGCGCTGCCGATCCGAACGAGGAAGACCAGACGGACTGGGAGATTCCCGGTGCCGACGTGTCTGGTGCGGGGTTCTACGACACGTACCGTAATGGTATCGGTCTGGAACCTGACAAGGATTACGTCATCATCCTTCCGACGAAGGACGATCCGCGGTCCCTGATCCGATTCACCGAGCCGTTCTCTGATGGCGAGGAGTGGTTCACCGTGCTGCGTGGTTATGCCAAGCCCTACACCGGGCCACAGCCGATTACCACGTTGGCGTTCCCGATCCGCACGTACGAAGGAACCACGTTGTTCATTGACAAGGCATCCGAGTTCGCTCTGGTGCGCTGCATGAACGACAACCCGATCACTGCTACCGTGAAGCTTATTCCCGGTACTGGTGACCAGATGGTTAGCGGCTCGTGGATTAACATAGCAGCTCGCGGTGCCGGGCAGGTGACTCTGAAGGGTGACCCCGGCGTTACTCTGGCAGTGCCTGCTGGTCTGAAGGCCGCAGCCCGCGCACGGAACTCCGTCATCACCCTCACTTGTGAGGACGCTGACACGAACGTCTGGCTCGTCTCTGGCGATCTGGCTTTGGAGGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b91742672ebd1f64b6ba1099438f12997b3aa73d14132bd97e8f43b3de38d98b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8130
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50