Protein

View in Explore
Genbank accession
YP_007677699.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MTLTQINKAGLDEIALDHVFTIGASGSSAYTFQGEGLNGTVNNPTLYLTRGKTYRFENGSGGHPIRIQSTSGASGTAYNTGVTNNAGSGTVIVEVQHDAPDVLYYQCTSHAAMNGILYITGALADGGVTTAKIADDAVTTVKIAANAVGSSELADNAVDTAAIADDAVTSAKIADGTIVAANIANDTITAVQLANNSANINVIVDGAVSTAKIADDAVTTAKIANDAVDTGQIATNSVTTLKLVDESVTLAKLEHGTSSNDGKFLRANNGADPTFETVTSTTINNNADNRVITGSGTANTLNGESNVIIDSNGHLGVGGAPDFEFQVTDSSGAAVIRAKDGANNKTVDIIANSTGGLIRTLGSYPLVLNTNQTERMRIDSSGRVGIQGTPNSSNFGAKLQVRESGQAATTLTALFGANENASGTTGGISDNTAKACRIGIPHYDTDQKAAAMFVGYTGSGVNELYIGGGTGMMNAATSVRIYADSSSTINNGGNQIARFDSDGLKFGTDTAAANALDDYEEGTFTAYLQSYYDGTSGQVASSDATYTKIGRKVFVQIRWLNSNTNGLNSSGALIKIGGMPFAPDNNKKCITTDFATFNVDFQNTNARHVFETDSNGWYGQLNYSQGSWGRWAVSRWRTSAIYFIFLELTLPNNRPSYVYKLSLNLF
Physico‐chemical
properties
protein length:666 AA
molecular weight: 69465,53250 Da
isoelectric point:4,87345
aromaticity:0,07357
hydropathy:-0,18453

Domains

Domains [InterPro]
DC_0856
STR
2–339
DC_0856 DC_2088
IPR008972
STR
32–121
IPR008972
YP_007677699.1
1 666
Architecture
STR
RBD
STR 2-339 | RBD 380-630 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007677699.1
1 666
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,1952
Central domain 11 250 241 0,0811
C-terminal 251 666 415 0,8653
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-250
C-terminal
251-666

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-GSP1
[NCBI] 		382262 Uroviricota > Caudoviricetes > Autographivirales > Lingvirus PGSP1 >
Host Prochlorococcus marinus subsp. pastoris str. CCMP1986
[NCBI] 		59919 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus > Prochlorococcus marinus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007677699.1 [NCBI]
Genbank nucleotide accession
NC_020878 [NCBI]
CDS location
range 22060 -> 24060
strand -
CDS
ATGACATTAACACAAATAAATAAGGCTGGTCTAGATGAGATAGCTCTGGATCATGTCTTTACAATAGGTGCTAGCGGTTCTAGTGCCTACACATTTCAAGGAGAAGGGTTGAATGGCACTGTCAACAACCCTACCCTTTACCTTACAAGAGGTAAAACGTATAGATTTGAAAATGGCTCAGGCGGTCATCCTATACGTATACAAAGCACATCTGGAGCAAGTGGTACTGCATACAACACTGGCGTAACTAACAACGCTGGTAGCGGTACAGTCATTGTTGAAGTACAACATGATGCACCTGATGTCTTATACTATCAGTGTACCAGTCATGCAGCCATGAACGGTATACTATACATTACTGGTGCACTTGCAGACGGTGGTGTAACTACAGCTAAAATTGCAGACGATGCTGTAACTACAGTTAAAATAGCAGCTAACGCTGTGGGGTCTAGCGAATTAGCGGACAACGCAGTTGATACAGCAGCAATAGCAGATGATGCAGTTACTTCAGCCAAAATTGCTGACGGAACTATTGTTGCAGCTAACATAGCCAATGATACTATTACAGCCGTTCAATTAGCTAATAACTCTGCAAACATAAACGTAATTGTAGATGGTGCAGTTTCTACAGCTAAGATTGCTGATGATGCAGTTACTACAGCCAAAATAGCTAATGACGCAGTAGATACAGGACAAATAGCTACCAACTCAGTTACAACTTTAAAACTTGTAGATGAATCAGTAACACTAGCTAAACTAGAACATGGCACATCATCTAACGATGGTAAGTTTTTACGTGCAAACAACGGAGCAGACCCTACGTTTGAAACTGTTACCAGTACAACAATAAACAACAACGCAGATAACAGAGTTATTACTGGCTCTGGTACTGCTAATACTTTAAATGGTGAGTCAAACGTAATTATAGATTCTAACGGACATTTAGGAGTAGGTGGCGCACCAGACTTTGAATTTCAAGTAACAGATTCTTCTGGTGCTGCTGTTATTAGAGCAAAAGACGGTGCTAATAATAAAACAGTTGACATAATTGCAAATAGCACAGGAGGTTTAATAAGAACTCTTGGTTCATATCCTTTAGTCCTTAATACAAATCAGACAGAACGTATGCGTATAGATTCGTCTGGAAGAGTTGGAATACAAGGAACTCCAAACAGTTCTAACTTTGGTGCAAAATTACAAGTACGAGAATCAGGTCAAGCTGCAACAACCTTAACAGCTTTATTTGGTGCTAACGAAAATGCTTCTGGTACAACAGGAGGAATTTCTGATAATACAGCCAAAGCCTGTCGCATAGGAATACCACATTATGATACCGACCAAAAAGCTGCTGCTATGTTTGTTGGTTATACAGGTAGTGGAGTAAATGAATTATATATTGGTGGTGGTACTGGTATGATGAATGCAGCAACATCAGTTCGTATATATGCTGATAGTTCTAGTACCATTAATAATGGTGGAAACCAAATAGCACGTTTTGATTCCGATGGATTAAAGTTTGGAACTGACACCGCAGCAGCCAACGCACTTGACGACTATGAAGAAGGAACTTTTACAGCTTATTTGCAAAGTTATTATGACGGCACATCTGGTCAAGTTGCTTCTAGTGACGCAACCTATACAAAAATAGGAAGAAAAGTTTTTGTACAAATAAGATGGCTTAATTCAAACACAAATGGATTAAATTCTAGTGGAGCTTTAATAAAAATTGGAGGTATGCCTTTTGCTCCTGATAATAATAAAAAATGTATAACAACTGATTTTGCTACTTTTAACGTAGATTTTCAGAATACTAACGCAAGACACGTATTTGAAACTGATTCAAATGGTTGGTATGGACAGTTAAATTATAGTCAGGGTAGTTGGGGTCGATGGGCTGTTAGTCGTTGGAGAACTTCTGCAATATATTTTATTTTTCTGGAACTTACATTGCCTAATAATAGACCGAGCTACGTCTATAAACTAAGCCTAAACCTGTTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f71d1012e981201fe2bb9fc4dbe20d6dd28dbe150741d598ab5f30309314a5b7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6624
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-GSP1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank