Protein

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Genbank accession
QBX25947.1 [GenBank]
Protein name
membrane protein
RBP type
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MSVSVAPYNTGIYAVDSGAATNTWSTISQMSGAPLNLGGTYDKSKSWLVKVSVSDSLMSAIPITQTISSEFVLVTKAPSGVAFGKIWEHGIIDAKGDVYVDGTIYCGDKPIQQKQLALNNGGSFRHDDTDLNSLQDTGFYCVFRGANRPVGAGPGYVTVVRHQTANYAYQQFYDRTNKTIFTRVLENGVWSGWSEYVKKDSLPTTIDSGWQSIGNGFSYRQTGSTVTVKYNFATNGIDKLTVGSMPTNLIPSDMMFAVTAWTIQLNVLNVQVSADGRILWFNPSKWTVNVKGQIQWTI
Physico‐chemical
properties
protein length:298 AA
molecular weight: 32596,31750 Da
isoelectric point:8,38361
aromaticity:0,11409
hydropathy:-0,15537

Domains

Domains [InterPro]
IPR008577
STR
2–257
IPR008577
cd19958
STR
127–196
cd19958
QBX25947.1
1 298
Architecture
STR
STR 2-257 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX25947.1
1 298
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,6278
Central domain 11 207 198 0,2673
C-terminal 208 298 90 0,9983
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-207
C-terminal
208-298

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan28
[NCBI] 		2548092 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus agalactiae
[NCBI] 		1311 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX25947.1 [NCBI]
Genbank nucleotide accession
MK448897 [NCBI]
CDS location
range 35169 -> 36065
strand +
CDS
ATGTCGGTATCTGTTGCGCCATACAATACTGGTATCTATGCAGTTGATAGTGGCGCAGCTACAAATACCTGGTCAACAATTTCCCAAATGTCAGGCGCCCCTTTAAATCTTGGCGGCACTTATGACAAATCAAAATCTTGGCTTGTTAAAGTATCTGTCAGTGATAGTTTAATGTCAGCAATCCCTATTACTCAAACGATTTCTAGTGAGTTTGTACTTGTAACTAAAGCACCTTCTGGTGTTGCATTTGGGAAAATTTGGGAACATGGCATTATTGATGCCAAAGGCGATGTTTATGTTGACGGTACTATTTATTGTGGCGATAAGCCAATCCAACAAAAACAACTTGCTCTTAACAATGGTGGTTCTTTTAGACATGATGACACTGACCTAAATAGCTTGCAAGACACAGGTTTTTATTGTGTATTTAGAGGTGCTAATAGACCTGTAGGGGCAGGTCCTGGGTACGTAACAGTTGTAAGACACCAGACGGCAAACTATGCTTATCAACAATTTTACGACCGTACAAATAAAACTATATTTACCAGAGTATTGGAAAATGGGGTTTGGAGCGGTTGGAGTGAGTATGTTAAAAAAGATAGCTTGCCTACAACGATAGACTCTGGTTGGCAGTCAATCGGCAATGGTTTTAGTTATAGGCAGACAGGCAGTACAGTCACAGTTAAGTACAACTTTGCGACGAATGGCATAGATAAGTTGACGGTTGGCTCTATGCCTACGAATTTGATACCTAGCGACATGATGTTTGCAGTAACGGCTTGGACTATACAACTCAATGTTTTAAATGTTCAAGTGAGCGCAGACGGTCGTATTCTGTGGTTTAATCCGTCAAAATGGACTGTTAACGTAAAAGGTCAAATTCAGTGGACAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8ec11d03738c33d754e16b78a87e927d136539494ddbfaa8145468b802e6ea44
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7829
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank