Protein

View in Explore
Genbank accession
ASD51193.1 [GenBank]
Protein name
unknown structural protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MPTITVLVAPEVVRNKPETERLHTVTGTALGWEKTSLNQDPDEILTECKGLDALLTQSNLQADGVTKVDPTKPIGFEITYEIHDPSAVLTTGLAITPATAGGEVGQVVELLATVAPANATYQGVNWYSGDITKAVHIGGGKFKLLASGSVTVYGVTIEGGHTDSTVITVAGALALSTDLAASQDVTAGADATFTIAATGGTTPYTYAWYFSDVPGGAGAVIDAGANATAATASLVITAVDAADEGEYWCVVEDADGHSVTSARCEMAVV
Physico‐chemical
properties
protein length:269 AA
molecular weight: 27460,30420 Da
isoelectric point:4,24152
aromaticity:0,05948
hydropathy:0,19368

Domains

Domains [InterPro]
DC_0400
STR
2–269
DC_0400
G3DSA:2.60.40.1080
STR
85–170
G3DSA:2.60.40.1080 IPR013783
IPR007110
STR
164–260
IPR007110
IPR003599
STR
180–269
IPR003599
IPR036179
RBD
181–261
IPR036179
PF13927
STR
183–252
PF13927
cd00096
STR
191–261
cd00096
ASD51193.1
1 269
Architecture
STR
STR 2-269
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage JA15
[NCBI] 		1983655 Uroviricota > Caudoviricetes > Pantevenvirales > Aglimvirinae > Limestonevirus
Host Dickeya solani
[NCBI] 		1089444 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ASD51193.1 [NCBI]
Genbank nucleotide accession
KY942056 [NCBI]
CDS location
range 5504 -> 6313
strand +
CDS
ATGCCAACAATCACTGTATTAGTAGCACCGGAAGTTGTTCGCAACAAACCGGAAACCGAGCGTCTGCACACTGTCACAGGCACTGCTCTGGGTTGGGAAAAGACCAGTCTTAACCAAGACCCAGACGAGATCCTGACTGAGTGTAAAGGTCTGGATGCACTGCTGACCCAGAGTAATCTGCAGGCGGACGGTGTGACCAAAGTTGATCCAACCAAGCCTATCGGCTTTGAGATCACCTACGAAATCCACGACCCAAGCGCTGTGCTGACAACTGGTCTGGCCATCACCCCTGCAACTGCAGGCGGCGAAGTCGGTCAGGTTGTTGAACTGCTGGCGACCGTCGCTCCGGCGAACGCGACCTATCAGGGCGTCAACTGGTACTCGGGTGACATTACCAAAGCCGTTCACATTGGCGGTGGCAAATTCAAGCTGCTGGCATCGGGTTCAGTGACCGTCTATGGTGTAACCATCGAAGGTGGTCACACTGACTCCACGGTCATCACAGTAGCGGGTGCGCTGGCTCTGTCTACTGATCTGGCCGCTTCTCAGGACGTGACAGCAGGCGCTGACGCAACCTTCACCATCGCTGCTACAGGCGGCACCACACCGTACACGTATGCTTGGTACTTCTCTGATGTCCCTGGCGGCGCTGGTGCGGTGATTGATGCAGGCGCTAATGCCACTGCAGCTACCGCAAGCCTGGTTATCACGGCAGTTGATGCCGCAGATGAGGGTGAGTACTGGTGTGTTGTTGAAGACGCCGACGGCCACTCTGTGACCTCTGCTCGTTGCGAAATGGCTGTGGTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b6bb416d0fc447195aa1fc36f3a14eb04c9e86a1de7e284f5c835e2d0a6a32c4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7189
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Environmental Bacteriophages of the Emerging Enterobacterial Phytopathogen, Dickeya solani, Show Genomic Conservation and Capacity for Horizontal Gene Transfer between Their Bacterial Hosts Day,A., Ahn,J., Fang,X. and Salmond,G.P.C. 2017 28912766 GenBank