Protein

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Genbank accession
YP_007237112.1 [GenBank]
Protein name
base plate tail tube protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MYYSLMRESKVIVEYDGRAYHFDALSNYDVSTSYEEYKTLRRTLHRRTNYADSIINVQSPSSISLAINFSNTLTEANFFEWLGFAREGNSFLLPLFSQNIEPIMFNVYIVNTNNSCVYFEHCYVSAVDFSLDNSVPILNVGIESGKFSEVSTYPLGASIIQGEVTKLSPPQVSTNSIVLPALLSASMSFQQQCSWREDKSVFDINKIYNNKRAYVNEMNASATLSFYYIKRFAGDMIYNIEPETNKPLTIRNQQIAINFPSTRITKRLDFSDVYKVEWDVIPTADSDPVRIDFFGEIKKDD
Physico‐chemical
properties
protein length:301 AA
molecular weight: 34508,42940 Da
isoelectric point:5,05659
aromaticity:0,13289
hydropathy:-0,24120

Domains

Domains [InterPro]
IPR056389
ATT
1–298
IPR056389
YP_007237112.1
1 301
Architecture
ATT
ATT 1-298 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007237112.1
1 301
Domain Start End Length (AA) Confidence
N-terminal 1 287 287 0,5860
Central domain 288 290 4 0,5685
C-terminal 291 301 10 0,9280
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-287
Central
288-290
C-terminal
291-301

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage phiR2-01
[NCBI] 		1206557 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus R201
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007237112.1 [NCBI]
Genbank nucleotide accession
NC_019919 [NCBI]
CDS location
range 98947 -> 99852
strand -
CDS
ATGTACTACTCTCTAATGAGAGAGTCAAAGGTTATAGTTGAGTATGATGGTAGGGCTTATCACTTTGATGCTCTATCCAACTATGATGTTAGTACTTCCTACGAAGAGTATAAGACTCTTCGTAGGACTCTTCATCGCAGAACCAACTATGCTGACTCTATTATTAACGTTCAATCTCCTTCCTCAATATCCTTGGCTATAAACTTTAGTAATACCCTTACCGAGGCTAACTTCTTTGAGTGGCTGGGATTTGCTAGAGAGGGTAACTCTTTCCTACTACCTTTATTTAGTCAAAACATTGAACCTATAATGTTTAACGTTTATATTGTGAATACCAATAATAGTTGTGTTTATTTTGAACATTGCTATGTTTCAGCAGTAGACTTCTCCCTAGATAATAGTGTACCAATCTTAAACGTTGGTATTGAATCTGGTAAGTTCTCAGAAGTATCTACTTATCCTCTTGGAGCCTCGATTATTCAGGGTGAAGTTACGAAGTTAAGCCCTCCTCAGGTATCCACGAACAGTATTGTACTACCTGCTCTTTTATCCGCTTCTATGTCCTTCCAGCAGCAATGTTCCTGGAGAGAAGATAAGAGCGTATTTGACATAAACAAAATATATAATAATAAGAGAGCTTACGTTAATGAGATGAATGCTTCTGCAACCCTATCTTTCTACTATATTAAACGCTTCGCGGGAGATATGATTTATAATATAGAGCCTGAAACAAACAAACCATTAACTATTCGTAATCAACAGATTGCGATTAACTTTCCTTCAACACGTATAACTAAACGCCTAGATTTCTCAGATGTATACAAAGTAGAGTGGGATGTGATTCCTACTGCTGACTCTGATCCTGTGAGAATAGATTTCTTTGGAGAAATTAAGAAAGATGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
31af91cfbc9aa9e674fab1a2bd2b1581405808214a027ab656f63716f9b8f75a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8114
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of five bacteriophages specific for Yersinia species Happonen,L., Butcher,S., Mattinen,L., Nawaz,A. and Skurnik,M. 2021-07-16 — GenBank