Protein

View in Explore
UniProt accession
A0A8S5S505 [UniProt]
Protein name
Pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MARQTYADNVDANGKVFKTVGDNIRMGARAGELLNFQEITDKIGSLEPEISALQADVMENERAIKKNSDDIGLLKEDKVDKPSTNDDGKIPRAKKGNVEWVEVGQPTDEQTNNAVTSWLNEHPEATTTVQNGSLTMEKFANTERLKLFDYYTPEDFGAIGDGKHDDTTAIQTMFDSAPKGAIFRFLKKNYAISDSITVKNPCTIIGEGANRYPFYENINNPGSVLSFLPGTIEKTMLTLKSAVTIQGMAFFGNSTTWSGEVTDMSIKDGNSCSWVTINYTGNNGIYCDAKGSDIINCSFFNFSGYGVFTGTMTGIHSSRFYYNNVGVVARDDGQIIDCEFGCEKYDIRDNHEEFFQDLPKSGCCNFQITHCRFDECEINHIHFGAAKHIMMVSCWGDQCGEAGLWLQTVSACYFQFCFERCGQKLRGEELDKLENQENCIKGCMIALTGYIRSCEFHVQSEQGSAKQYPVHTTDNELYHPSTIVAVYDLKNGTSGVPFESVMFISGYFDGNKKITLGNKMGYDFYLPKQIMYVPVTKSIAERRATGLNGVIVIEGVSINVRLAQQNTENLISGQISRNGWVSEFVDHTTTLAPLVGDMWKKGNTVYRYNGGENYNMNDWDKLYEL
Physico‐chemical
properties
protein length:625 AA
molecular weight: 69801,52560 Da
isoelectric point:5,03533
aromaticity:0,10560
hydropathy:-0,41248

Domains

Domains [InterPro]
DC_1803
STR
90–621
DC_1803
IPR011050
STR
150–412
IPR011050
IPR012334
STR
154–415
IPR012334
A0A8S5S505
1 625
Architecture
STR
STR 90-621 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A8S5S505
1 625
Domain Start End Length (AA) Confidence
N-terminal 1 162 162 0,9832
Central domain 163 535 374 0,9751
C-terminal 536 625 89 0,8636
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-162
Central
163-535
C-terminal
536-625

Taxonomy

  Name Taxonomy ID Lineage
Phage Podoviridae sp. ctEmK1
[NCBI] 		2827727 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAF46117.1 [NCBI]
Genbank nucleotide accession
BK032531 [NCBI]
CDS location
range 10703 -> 12580
strand +
CDS
ATGGCAAGACAAACATATGCGGACAATGTGGACGCAAACGGTAAAGTGTTTAAAACGGTCGGTGATAATATCCGAATGGGTGCGAGAGCAGGGGAGCTTTTAAATTTTCAAGAAATTACTGACAAGATTGGTTCACTTGAACCGGAGATTTCAGCGTTACAAGCTGATGTGATGGAAAATGAACGGGCTATCAAAAAGAATAGTGACGATATTGGTTTACTAAAGGAAGATAAAGTTGACAAACCATCCACTAATGATGATGGCAAAATACCAAGAGCAAAAAAGGGTAACGTGGAGTGGGTAGAGGTAGGTCAGCCTACAGATGAACAAACAAATAATGCAGTAACAAGTTGGTTAAATGAACACCCGGAAGCTACAACTACTGTACAAAACGGTTCTCTTACAATGGAAAAGTTTGCAAATACAGAAAGGTTAAAACTTTTCGATTACTATACACCGGAAGATTTCGGGGCAATTGGCGATGGTAAACATGATGATACTACTGCAATTCAGACTATGTTTGATTCAGCCCCTAAAGGTGCTATATTTCGTTTTTTAAAAAAAAATTATGCAATTAGCGATAGCATCACCGTTAAAAATCCTTGCACTATTATTGGAGAGGGAGCTAATCGATATCCTTTTTACGAAAATATTAACAACCCTGGAAGTGTTTTGAGTTTTTTACCGGGAACGATTGAAAAAACAATGCTCACACTCAAAAGTGCTGTAACAATACAAGGAATGGCTTTTTTTGGGAATAGTACAACTTGGTCAGGAGAGGTTACTGATATGAGCATTAAAGATGGTAATTCTTGTTCATGGGTCACAATAAATTATACCGGAAACAATGGTATTTACTGCGACGCAAAAGGTTCTGACATTATAAATTGTTCTTTTTTTAATTTTAGTGGTTATGGTGTTTTTACTGGAACAATGACTGGAATCCATTCTTCTAGGTTTTATTATAATAATGTTGGGGTCGTTGCTCGTGATGATGGGCAAATTATTGATTGTGAATTTGGGTGCGAAAAATACGATATTAGAGACAACCATGAAGAATTTTTTCAAGATTTACCGAAATCCGGTTGTTGCAATTTTCAAATCACACATTGCCGTTTCGATGAATGCGAAATCAATCACATACATTTTGGAGCGGCAAAACATATTATGATGGTAAGTTGTTGGGGGGACCAATGCGGAGAAGCGGGCTTATGGTTACAAACAGTAAGTGCATGCTATTTCCAGTTTTGTTTTGAACGCTGTGGGCAAAAATTAAGGGGAGAAGAATTAGATAAACTTGAGAACCAAGAAAATTGTATAAAAGGATGCATGATTGCGTTGACTGGGTATATTAGAAGTTGTGAATTTCATGTACAAAGTGAACAAGGGAGTGCCAAACAATATCCAGTTCATACAACAGATAATGAATTGTATCATCCATCTACTATAGTAGCTGTATACGATTTAAAAAACGGAACATCTGGTGTCCCATTTGAAAGTGTTATGTTCATTAGTGGGTATTTTGATGGAAATAAAAAAATTACTTTAGGAAATAAAATGGGTTATGATTTTTATTTGCCAAAACAAATAATGTATGTGCCTGTTACTAAATCAATAGCAGAGCGTAGAGCAACTGGGCTTAATGGCGTTATTGTTATAGAGGGAGTATCAATTAATGTAAGACTTGCACAGCAAAATACAGAAAACTTGATTAGTGGGCAAATATCAAGAAATGGGTGGGTAAGCGAATTTGTTGACCATACAACTACATTAGCTCCACTAGTTGGTGATATGTGGAAAAAAGGAAATACTGTTTACCGATATAATGGGGGTGAAAATTATAATATGAATGATTGGGACAAGCTATATGAATTGTGA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0016829 lyase activity Molecular Function IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
45c541cfbda07e4e6b58df6bdc4098127399b03bd3e9bf8a32c57617834947d8
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,5628
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50