Protein

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Genbank accession
QGT53521.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence RBPdetect
Probability 0,83
Protein sequence
MINENTLNFIRFSSGFNNLKKEELETFAENEIFELNEYNASEEKQRKHFYTLLQSTDGTEGVEQEDGKYTHTAWSYSSDGTEGFTTVYPNLNLIDGSKDFSGNWVNAGSWVTDGTYKGLTVKKRTRQWDGIYKTFTAPKDGTYTFSAYVKSSGSAANIYRYVYINGKNVSNIIPNKLMGNDFDWLRDSFTVTLKAKDIVYVKYEITGSGSDSILWTAGHKWEEGSTATPYITLKAKDIVYVKYEITGSGSDSILWTAGHKWEEGSTATPYMPSANEVTPADCPRYIGQYTDYTLEDSINPSSYTWREIKGKYYYTLEDVNTNGTLKSYIIECLKLSLQTRWGNNLEYHIDRKTKYLNKLTGMQA
Physico‐chemical
properties
protein length:364 AA
molecular weight: 41489,49530 Da
isoelectric point:5,44690
aromaticity:0,14011
hydropathy:-0,66126

Domains

Domains [InterPro]
DC_1800
STR
85–232
DC_1800 DC_1971
IPR008983
RBD
123–222
IPR008983
IPR008983
RBD
126–204
IPR008983
QGT53521.1
1 364
Architecture
STR
STR
STR 85-232 | STR 268-361 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGT53521.1
1 364
Domain Start End Length (AA) Confidence
N-terminal 1 146 146 0,0836
Central domain 147 353 208 0,6931
C-terminal 354 364 10 0,2193
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-146
Central
147-353
C-terminal
354-364

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage CHPC973
[NCBI] 		2675261 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGT53521.1 [NCBI]
Genbank nucleotide accession
MN689529 [NCBI]
CDS location
range 817 -> 1911
strand -
CDS
ATGATTAATGAAAATACATTGAATTTTATTCGCTTTTCTAGTGGTTTCAATAACTTAAAAAAGGAAGAACTTGAAACCTTTGCAGAAAATGAAATCTTTGAACTTAATGAGTATAATGCAAGTGAGGAAAAACAAAGAAAACACTTTTATACTTTGTTACAATCTACTGACGGAACGGAAGGAGTAGAACAGGAGGATGGAAAATATACTCACACAGCATGGTCATATAGTTCAGACGGAACGGAAGGCTTCACGACTGTTTATCCAAATTTAAACTTGATAGACGGCAGTAAAGATTTTAGCGGTAATTGGGTTAATGCAGGTAGTTGGGTAACTGACGGAACATATAAAGGATTAACTGTTAAAAAACGAACCCGTCAATGGGATGGTATTTATAAAACATTTACAGCTCCAAAAGACGGAACTTATACTTTCTCGGCTTATGTTAAAAGTTCAGGAAGCGCAGCGAACATATACAGATATGTTTATATAAATGGTAAAAATGTTAGTAATATCATTCCTAATAAGTTAATGGGAAATGATTTTGATTGGTTGAGAGACAGTTTCACTGTAACTTTGAAAGCCAAGGATATTGTTTATGTCAAATATGAAATAACTGGTTCAGGTTCAGATTCAATTTTATGGACTGCCGGTCATAAGTGGGAAGAAGGTTCAACTGCTACACCATACATAACTTTGAAAGCCAAGGATATTGTTTATGTCAAATATGAAATAACTGGTTCAGGTTCAGATTCAATTTTATGGACTGCCGGTCATAAGTGGGAAGAAGGTTCAACTGCTACACCATACATGCCTTCAGCTAACGAAGTAACACCTGCTGACTGCCCAAGATATATAGGTCAATATACAGATTACACGCTAGAGGATAGTATAAACCCTAGTTCTTATACTTGGAGAGAAATAAAAGGAAAATATTACTACACTTTAGAGGATGTCAACACGAATGGAACGCTTAAAAGTTACATCATTGAATGCTTAAAACTTTCACTGCAAACACGGTGGGGAAACAATTTAGAGTACCACATCGATCGCAAAACGAAATACTTAAACAAATTAACTGGAATGCAAGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b83a605fd1d69a9d10ca1939ee386848c16a99b8d87698ba020b774e28dd2f68
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6011
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Sequences of 31 Lactococcus lactis Bacteriophages Isolated from Foods Marcelli,B., de Jong,A. and Kuipers,O.P. — — GenBank