Protein

View in Explore
Genbank accession
QVW27667.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,85
Protein sequence
MALVIHYTRNEDGTFDVKRYRDNPMNFVVNHVPDGVPVRVFIDEIGEDNDVTEDFEALKENATFHIVESAGGGAIKGVMKIFSVILKPLAKLLSPSVKGASSNLANSQADSPNNSLTDRNNKARPYERSYDICGTVQTIPNNLMSTYKVFNAAGKIVEYGYYDAGRGYLDIHPEGITDGDTRVSDITGTSVAVYSPYTSPNNTSAPQVMVGDPIEQGLYITVESNEVDGVVLKAQNGLGISFSYMSGYPSLSGSTGTIYDPSGGSDFSGVLVPNDTFSLVSAWTNTDVDLSGGGYQVISVSEGTVTFVVPGNLISKWQQIQPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGRSKTLASVTAEIQYQLLDENSVPYGQIYTAQGTVSGRTSDYNGVTIYADLPVASRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMSPNTQAVQSLIRLARDPDVGGLDLTVRNMDKLLAVQKEIEDYFGDKQAGEFCYTFDDYKTTMQDIVNTIADAIFCTPYRRGADILLDFERPRIGPEMVFTHRSKAGTSEKWTRTFNDAQVFDSLKFSYIDPKTNTKEVITIPETGGLKTETYDSKGIRNYKQAFWAANRRHQKNTLKKISVSFSATEEGIFALPNRAVSVVKGSRMSTYDGYITAVNGLTVELSQPVKFTSGDDHSLVLKRRDGGVQSVKVTPGAHDRQVIMAEVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSNGFDNGFN
Physico‐chemical
properties
protein length:852 AA
molecular weight: 93966,67880 Da
isoelectric point:5,23347
aromaticity:0,09742
hydropathy:-0,40481

Domains

Domains [InterPro]
DC_0118
STR
1–686
DC_0118 DC_0808
NF040662
Unmapped
352–832
NF040662
QVW27667.1
1 852
Architecture
STR
RBD
STR 1-686 | RBD 703-846 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QVW27667.1
1 852
Domain Start End Length (AA) Confidence
N-terminal 1 230 230 0,9729
Central domain 231 429 200 0,6363
C-terminal 430 852 422 0,1435
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-230
Central
231-429
C-terminal
430-852

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage PSDA-2
[NCBI] 		2831171 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVW27667.1 [NCBI]
Genbank nucleotide accession
MW725301.1 [NCBI]
CDS location
range 18344 -> 20902
strand -
CDS
TTGGCGCTAGTAATCCACTATACCCGCAACGAAGACGGCACATTTGACGTTAAACGTTATCGCGATAATCCGATGAACTTCGTCGTGAACCATGTTCCGGACGGGGTGCCGGTGCGTGTTTTCATTGACGAAATCGGAGAAGATAACGACGTAACAGAAGACTTCGAAGCACTGAAAGAAAACGCGACTTTCCACATTGTGGAATCTGCCGGTGGTGGCGCTATTAAAGGCGTCATGAAGATTTTTAGCGTTATCCTTAAACCGCTAGCGAAACTATTATCACCATCCGTGAAAGGGGCGTCATCTAACCTTGCGAACTCCCAAGCAGATTCGCCAAACAACAGTCTCACCGACCGTAACAACAAGGCCCGCCCATACGAGCGCAGCTACGACATCTGCGGAACGGTGCAAACTATCCCAAATAACCTTATGTCTACTTATAAGGTGTTTAACGCCGCTGGTAAAATTGTAGAGTACGGCTATTACGACGCCGGGCGTGGTTACCTAGACATACACCCTGAAGGTATAACTGACGGGGACACCCGCGTATCAGACATAACAGGCACGTCGGTTGCCGTGTACTCACCATATACATCGCCCAATAACACATCGGCGCCCCAGGTCATGGTCGGCGACCCTATAGAGCAGGGCCTGTACATTACCGTAGAATCTAACGAAGTAGATGGCGTGGTTCTGAAAGCACAAAACGGACTTGGCATCTCGTTTTCTTACATGTCGGGATACCCTTCGTTATCCGGTTCCACCGGCACGATATACGACCCGTCAGGAGGGTCTGACTTCTCCGGTGTTCTTGTGCCGAATGATACGTTTTCTCTCGTATCCGCCTGGACAAATACAGATGTTGACCTTTCCGGTGGCGGATATCAGGTAATAAGTGTTTCCGAAGGAACTGTTACTTTCGTAGTCCCCGGTAATCTTATAAGTAAATGGCAACAAATACAGCCAGGTTCATTTTTCCGGGGAGATGGTGAAGCATCATTGCAACCAGACAACACCTATGAAAAAACGTTAACTGATTGGGTGTCCATAAACCGAACTGAGGTGGAACGTATTGTCGCTAACATAGCTGCTGCAAACGGGATGTACAAAGACAATGGTAGGTCTAAAACGTTGGCTTCGGTAACGGCTGAAATACAATACCAACTTCTTGACGAAAATAGCGTACCTTACGGCCAAATTTACACGGCGCAAGGAACCGTATCCGGGCGCACTTCTGACTATAACGGGGTGACTATATACGCAGATTTACCAGTAGCATCTCGTGTTCGCGTTAGGGCGAGAAGGGTAACAGACCTTGATTTCAATTTCGAAGGCTCAGTGGTAGACGAAATAACCTACGTTAACCTGTACGGGCAGACTCGCGACAACACCCCGCACTACGGCAACCGAACCACTGTGCACTCAATGCGTAAGCAGACACCGCGGGCTGCCGAAGTTAAGCAACCTCAGTTGCGCATGATTGCGACCGAGATGGTGTATAAATATCTCGGGAATGGAGTGTTTGAGGATACGATGTCACCTAACACCCAAGCAGTTCAATCGTTGATTCGCCTCGCCAGGGACCCGGACGTCGGGGGGCTTGACTTAACAGTAAGGAATATGGATAAGTTGCTTGCTGTTCAAAAGGAAATAGAGGACTACTTCGGCGACAAGCAAGCAGGAGAATTCTGTTACACCTTTGACGATTATAAAACAACAATGCAGGATATCGTCAACACTATTGCCGATGCTATTTTTTGCACGCCATACCGTAGAGGCGCTGACATTCTGCTTGACTTCGAGAGGCCTCGTATTGGGCCTGAAATGGTATTTACCCACCGCAGCAAGGCGGGAACCTCCGAAAAATGGACAAGAACTTTCAATGATGCACAGGTTTTTGACAGTTTAAAATTCTCTTACATAGACCCAAAAACTAACACTAAAGAGGTGATAACAATCCCTGAAACTGGCGGTTTGAAGACTGAAACATACGATTCGAAGGGGATACGCAACTATAAGCAGGCTTTCTGGGCCGCAAACAGACGACACCAGAAAAACACTCTTAAGAAGATTTCGGTATCGTTTAGTGCCACGGAAGAGGGGATATTTGCGCTACCAAACAGGGCTGTTAGCGTAGTGAAAGGCTCCCGGATGTCTACCTATGACGGCTACATAACGGCGGTAAACGGCCTCACTGTGGAGCTGTCACAGCCTGTTAAATTTACATCCGGAGACGACCACTCTCTTGTTCTCAAGCGGCGAGATGGTGGCGTCCAAAGCGTCAAAGTCACACCAGGTGCGCACGACAGGCAGGTGATTATGGCGGAAGTCCCCCAAGAGGCAATATACACCGGCAACAGCGCTTTAAAAACTGAGTTTTCATTTGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACGGTAGATCCTGGCGACGACCGAACAGTTAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTTGACAACGTGCCTCCTTTCGGTCGTGCGTTCTCTAACGGATTCGATAACGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b14a439f68dd059f7a2bf24a020f997f7026554238a006d6034349704c14efd9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8194
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, Characterization and genomic analysis of novel Salmonella phage PSDA-2 Sun,Z. 2021-06-21 — GenBank