Protein

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Genbank accession
ATE85542.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSGCGDVITLNDLQIAKKHQLFEAEVITGKAGGVAGGADIDYATNQVTLQTQKTLPAVLRDAGFSPASFNFTTGGTLGVNDADKAVLWPVEDGGDGNYYAWRGSLPKVIPAASTPLTTGGISDSAWVAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFTDGEIVNFGGKTVTIDCKAKFIGDGILNWNNLGRGSKVISPHMHTKTTPYTVYRFDDNGNWVTNPATVLASVAQRLDKGYKPNVNDLDIWASLPDYVKNQVAGATLRVNSANNINVVHPEATMGGYLFTLCNHILVESPRNFIAWESGITFENHHTTAWGTGNKVVGGEIKYGSGSAVLFIRNDGGDDHDGGVRDLISYRVGESGVKTYQNEIGGRSARNYRLVFDNITTIQCYYDGIDVNADTGSPTERVDDYTLAEYPWFQLPTRHIIRNIITKDCMGIGAWWDGQNNTIDNIVTYEAHKEGVFDRGTNNDITNITVVGANKDLTNLNQIVCEGGSRLRGIMVHAYTAQGYAVYAPASEISNVSCAGSGTKKILCTYIADVQGGNINVQHSANQMTLAMQPAMGGTTNPSLLMTADCQVAIPGGEASIVRLSAIQDGVRVGELQLNRLGFKHMSIPASPSQLPESALEFNSSVGFFFGSDGALRLLAKKPDGTFVTYTL
Physico‐chemical
properties
protein length:675 AA
molecular weight: 72726,61910 Da
isoelectric point:5,30174
aromaticity:0,08889
hydropathy:-0,18430

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–136
G3DSA:2.10.10.80 IPR012332
IPR040775
RBD
93–132
IPR040775 IPR011050
IPR015331
RBD
138–674
IPR015331
ATE85542.1
1 675
Architecture
ATT
STR
ATT 65-136 | STR 137-675
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATE85542.1
1 675
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9908
Central domain 155 559 406 0,9916
C-terminal 560 675 115 0,9111
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-559
C-terminal
560-675

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage St161
[NCBI] 		2024311 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica sv.
[NCBI] 		2846078 Duplornaviricota > Chrymotiviricetes > Ghabrivirales > Chrysoviridae > Alphachrysovirus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATE85542.1 [NCBI]
Genbank nucleotide accession
MF158036.1 [NCBI]
CDS location
range 1969 -> 3996
strand -
CDS
ATGTCAAGCGGTTGCGGCGATGTTATAACACTAAACGATTTGCAAATAGCTAAAAAGCATCAGCTTTTCGAAGCCGAAGTCATCACGGGTAAGGCTGGAGGCGTTGCCGGAGGGGCAGACATTGACTATGCGACAAACCAAGTGACGTTACAGACGCAAAAGACGCTTCCTGCGGTCTTACGTGATGCCGGTTTCTCTCCAGCGTCTTTTAATTTCACAACCGGCGGAACCCTAGGGGTTAACGACGCGGATAAAGCGGTTCTTTGGCCTGTAGAAGACGGCGGAGACGGCAACTATTACGCATGGCGGGGTTCGCTGCCTAAAGTTATCCCTGCGGCGTCGACACCTCTTACGACAGGTGGCATTTCGGATTCCGCTTGGGTCGCGTTCGGGGATATCACCTTTCGCGCAGAAGCGGATAAGAAATTTAAGTACTCGGTTAAGCTTTCGGACTTTACTACTTTACAGCAATTAGCCGATGCCGCTGTTGACAGCGTTCTTATCGACCGCGATTACACATTCACCGATGGCGAGATAGTAAATTTTGGTGGTAAGACCGTAACCATTGATTGCAAGGCTAAGTTTATTGGTGATGGTATCCTTAACTGGAATAACTTGGGTCGTGGTTCCAAAGTTATTTCCCCCCACATGCATACTAAAACCACGCCATACACTGTATATCGTTTCGATGATAACGGGAACTGGGTAACAAACCCGGCTACAGTATTGGCGTCCGTAGCCCAAAGATTAGATAAAGGATACAAGCCAAATGTTAACGACCTAGACATTTGGGCGTCTCTACCTGATTACGTTAAGAATCAGGTAGCCGGGGCTACCTTGCGTGTTAATTCTGCCAATAATATTAATGTTGTTCATCCAGAAGCCACTATGGGAGGGTATTTATTCACGCTCTGTAATCATATTTTAGTTGAGTCGCCTCGCAACTTTATTGCATGGGAATCTGGTATTACATTTGAGAATCACCATACTACTGCCTGGGGCACTGGCAATAAGGTAGTGGGTGGAGAGATTAAATATGGTTCTGGTTCTGCTGTGTTGTTTATCAGAAATGATGGTGGCGATGACCACGACGGTGGGGTTAGGGACTTAATCTCCTATCGCGTAGGTGAAAGTGGTGTAAAAACTTATCAAAACGAAATAGGTGGGCGTTCTGCAAGAAACTACCGCCTGGTGTTTGATAACATAACTACGATTCAATGTTATTACGATGGTATTGACGTTAATGCAGATACTGGTTCACCGACTGAGCGAGTTGATGATTACACTTTAGCTGAATACCCGTGGTTTCAATTGCCGACTAGACACATAATTCGTAATATTATTACGAAAGACTGTATGGGTATTGGCGCTTGGTGGGACGGCCAAAATAACACTATAGATAATATTGTGACGTATGAGGCCCACAAAGAGGGGGTTTTTGACCGAGGAACTAATAACGACATCACTAACATTACGGTAGTTGGTGCAAACAAAGACCTAACCAACCTGAACCAGATTGTTTGTGAAGGTGGGAGTCGTCTAAGAGGTATAATGGTACATGCATATACCGCGCAAGGATATGCAGTATACGCTCCGGCCTCAGAAATTAGCAATGTTTCATGTGCGGGCTCCGGCACTAAGAAGATACTTTGTACATATATTGCCGATGTTCAAGGCGGTAACATTAATGTTCAGCATAGCGCTAACCAAATGACCCTGGCAATGCAGCCCGCAATGGGGGGTACTACAAACCCATCATTACTTATGACGGCGGATTGCCAGGTGGCTATTCCTGGAGGTGAGGCCAGTATTGTTAGACTGTCTGCTATTCAGGATGGGGTGAGAGTTGGCGAGCTACAGTTGAACCGCTTGGGCTTTAAGCATATGAGTATACCCGCGTCCCCTTCTCAGTTGCCCGAGAGTGCGTTGGAATTTAATTCTTCTGTAGGTTTCTTCTTTGGAAGTGATGGCGCATTGCGACTTCTTGCTAAGAAACCCGATGGGACATTTGTGACCTATACACTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fd8fd0cf70a06c8e4156fb9f30f96a6e5b04634e80fde9b6ee9f0a66ef6044c4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7154
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank