Protein

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Genbank accession
AMO43673.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,53
Protein sequence
MAAIDGATKSLMQGVSQQVPRERLDGQVSLQVNMLSDAVEGMRRRPGMRYLTSNIFPGGAWNKEQVFATSVDIGDEPHHILINTATGVVNVYNSNMSLVATDDFFYLLAPTAASIQVAALRGYLYICNTEQFPVKNVTNAGKQNPDKTGFFFVKTGQYSKIYNVTLNVNGVQYASSYTTPNGSAPGDAALSTPEYVAGKLVDGIVAHAIPGLSFAIAGSYVYLVTTGAGAITVTSDSGTNFISASNQSHVTLTTELPARMPAAANGMLVSVGANPSLSVWYRFDFVNNAWVESGAWNSADFLTNMPIRLKLDNSYVMDQPNYEGRLSGNDNTNEDPAFLTDGVTGLSVFQGRLVILSGATVCMSAAGKPLRWYRSTTTELLVADPISIFSGSATTANFTHAIQFNKDLLLFAKTCQAVVPSGNSVVAPSTAQIVITSAYNTTSKVLPIVAGRSLMYFAPRSEKFASVLEMVPSNTTDSQYTTNDVTAHIPQYMPGTIRQATASTTSNSLVLVADGDARTLFVHEYLWGGDEKLQSAWHNWTAPYDIVCTWFVRDTIYVGMLVDGDLAIVTIDSQAGDTANGLYRPFSDMFIGTAVVGGTFTVPTALRAAYTAGAELQLTYTTGAVAGEAVGFSINTATWVGTAVRNVPDGTYFLGLKYRSTLSPTPPLLRDQNGVVIGTAGTSLIRYEASLKNTGDFHVVVQRHDETTSEGVYSGLTYSSQDLIPGGPLYAKSSRCIIPVRLNPDASSVIMYAEDDHDLGVLTLEHVMQYHPRRRRM
Physico‐chemical
properties
protein length:777 AA
molecular weight: 83559,21430 Da
isoelectric point:5,49596
aromaticity:0,09395
hydropathy:0,00180

Domains

Domains [InterPro]
IPR058003
TTP
1–777
IPR058003
DC_0058
STR
1–777
DC_0058
AMO43673.1
1 777
Architecture
STR
STR 1-777
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMO43673.1
1 777
Domain Start End Length (AA) Confidence
N-terminal 1 138 138 0,9874
Central domain 139 337 200 0,1450
C-terminal 338 777 439 0,3336
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-138
Central
139-337
C-terminal
338-777

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage YMC11/06/C171_PPU_BP
[NCBI] 		1777063 Uroviricota > Caudoviricetes > Autographivirales > Corkvirinae > Kantovirus
Host Pseudomonas putida
[NCBI] 		303 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMO43673.1 [NCBI]
Genbank nucleotide accession
KU310944 [NCBI]
CDS location
range 42962 -> 45295
strand +
CDS
ATGGCGGCTATCGACGGCGCAACCAAATCGTTAATGCAGGGCGTGTCCCAGCAAGTACCCCGCGAACGTCTCGACGGCCAGGTCTCCCTTCAGGTGAACATGCTGTCGGACGCCGTTGAAGGCATGCGCCGCCGGCCCGGTATGCGGTACCTGACCAGCAACATCTTCCCGGGCGGCGCTTGGAACAAAGAGCAGGTGTTCGCCACCTCCGTGGACATTGGGGACGAGCCCCACCACATCCTGATCAACACCGCCACCGGCGTTGTGAACGTGTACAACAGCAATATGTCGCTGGTGGCTACTGACGACTTCTTCTACCTGCTGGCGCCTACCGCTGCCAGTATTCAGGTAGCGGCATTACGTGGGTACCTGTACATCTGCAACACTGAGCAGTTCCCAGTCAAGAACGTGACTAATGCCGGCAAGCAGAACCCTGACAAGACGGGTTTCTTCTTTGTGAAGACGGGGCAGTACAGCAAGATTTACAACGTCACTCTGAACGTGAACGGGGTGCAGTACGCCTCATCGTACACTACACCGAACGGATCCGCCCCCGGCGATGCCGCCCTGAGCACGCCTGAGTACGTAGCTGGCAAGCTGGTGGACGGTATTGTGGCACACGCCATTCCGGGCCTCTCCTTTGCCATCGCGGGCTCGTACGTGTACCTTGTCACCACGGGTGCTGGGGCCATCACTGTGACCTCAGATTCCGGCACAAACTTCATCAGCGCCTCGAACCAGTCCCATGTCACCCTGACTACTGAGCTCCCTGCCCGGATGCCCGCAGCTGCCAACGGCATGCTGGTAAGCGTGGGCGCCAACCCATCGCTATCCGTGTGGTACCGCTTTGACTTCGTGAACAACGCGTGGGTTGAGTCGGGGGCTTGGAACAGCGCCGACTTCCTGACGAATATGCCCATCCGGTTGAAGCTGGATAACTCCTACGTGATGGACCAGCCAAACTATGAGGGGCGTTTGTCGGGTAACGACAACACGAACGAGGACCCCGCCTTCCTTACGGACGGCGTGACCGGTCTGAGCGTATTCCAAGGCCGTCTGGTAATCCTAAGCGGGGCAACGGTGTGTATGAGCGCTGCGGGCAAACCCCTGCGCTGGTACCGTAGCACCACTACGGAACTCCTCGTTGCCGATCCCATCAGCATCTTCTCAGGCTCGGCTACCACTGCCAACTTCACACACGCCATCCAGTTTAACAAGGACTTGTTACTGTTTGCCAAGACCTGCCAAGCGGTAGTGCCCTCGGGTAACTCTGTAGTGGCGCCCAGTACGGCCCAGATCGTCATCACCAGTGCGTACAACACAACTAGCAAGGTGCTGCCTATCGTGGCAGGGCGGTCCCTAATGTACTTCGCACCCCGCAGCGAGAAGTTCGCCAGCGTCCTAGAGATGGTGCCGAGTAACACCACGGACTCGCAATACACCACCAACGACGTAACTGCACACATCCCACAGTACATGCCGGGGACCATTCGGCAGGCTACGGCTAGCACCACCAGCAACAGCCTTGTGCTTGTCGCTGACGGGGATGCCCGCACCCTGTTTGTGCACGAGTACTTGTGGGGTGGGGATGAGAAACTGCAGTCTGCATGGCATAACTGGACCGCACCGTATGACATCGTGTGTACTTGGTTTGTCCGCGACACAATCTACGTCGGTATGTTAGTAGACGGCGACCTCGCAATTGTCACGATCGACTCACAGGCAGGCGACACAGCCAACGGCCTGTACCGCCCGTTCTCGGACATGTTCATCGGCACTGCAGTCGTCGGCGGCACCTTTACGGTTCCCACGGCGCTGCGCGCTGCATACACAGCCGGAGCCGAGTTGCAGTTGACCTACACCACCGGCGCAGTTGCTGGCGAGGCAGTAGGCTTCAGCATCAACACAGCCACTTGGGTTGGTACAGCGGTGCGTAACGTCCCTGACGGCACGTACTTCCTAGGCCTCAAGTACCGCAGCACGCTGTCACCTACACCACCGCTACTGCGCGATCAGAACGGTGTGGTGATTGGAACCGCAGGCACATCCCTGATCCGGTACGAGGCCTCCCTGAAGAACACGGGTGATTTCCATGTGGTTGTGCAACGGCACGACGAGACTACCTCGGAAGGGGTATACTCCGGCCTTACATACAGCTCGCAGGACTTGATCCCCGGTGGGCCCCTGTACGCCAAGAGTAGCCGGTGCATCATCCCAGTGCGTTTGAACCCCGACGCCTCTAGCGTGATCATGTACGCAGAAGACGATCACGACCTCGGCGTGCTTACCCTTGAGCACGTTATGCAGTACCACCCTCGACGACGGAGAATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0cdb6c9b8dd9575e2ab8ec17f20ce137d8d5330c0483570035c35bbbbf2185e5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9009
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of the Pseudomonas putida phage YMC11/06/C171_PPU_BP Jeon,J., Yong,D. and Lee,K. 2014-09-04 — GenBank