Protein

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Genbank accession
YP_009804021.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MALAPKTVLTYPLNGTNRDFTIPFEYLARKFVQVTLIGTDRKLLTLNIDYRFTLRTIITLTKNWGPADGYERIEIRRYTSATERLVDFSDGSILRAYDLNTSQVQSLHIAEEGRDVASDTIGVNNDGDLDARGRKIVNLADATSDGDAVTLRQEKAWSASALNQANRAEQQANASANSAAQSFQDANRAGSQAAAAADANTKAQDAAVRSYGDANRSTQFANESSRHAGNSAQSANEAAIWAAHPENVPAQGNKYSSYHYSRKSADSAAQSFQDANRSKSEADRAAVEAGKLGNANDFMSTLGGINHGTGLVSFKSSYGLLAKSVTTHGNVESYGNLISRGSVVGVYATSDSTGPEGNAHFWFYSKSGASKGIIYSTGAAGEIVTQTGSGSNSLIVKSQKGVAYIGDHQIYTNGNLNPALYLVKHNGTHSATKMFAANNPWTLQPTDQNYSASIELREAAELSTKTGGDIVFAPGLSFHYGGYNIRKLVMSSDSRLKYGTHNGGFRNVKVTPSAQVSLWAGSWSLGQTINIGAGRLGRHIHVWSSYGSLPRMCISVQIPIEDGAAIVISSGGGHWTVRFYADGRATMIDAGVVQPITEVTMCDDEAN
Physico‐chemical
properties
protein length:607 AA
molecular weight: 64892,84440 Da
isoelectric point:7,27394
aromaticity:0,08237
hydropathy:-0,37759

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604
DC_0657
STR
1–604
DC_0657
YP_009804021.1
1 607
Architecture
ATT
STR
ATT 1-131 | STR 132-604 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009804021.1
1 607
Domain Start End Length (AA) Confidence
N-terminal 1 292 292 0,8085
Central domain 293 491 200 0,2888
C-terminal 492 607 115 0,9787
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-292
Central
293-491
C-terminal
492-607

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PFP1
[NCBI] 		2201462 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Pfluvirus
Host Pseudomonas fluorescens
[NCBI] 		294 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009804021.1 [NCBI]
Genbank nucleotide accession
NC_047997.1 [NCBI]
CDS location
range 35594 -> 37417
strand +
CDS
ATGGCACTCGCTCCAAAGACAGTCCTCACGTATCCGCTCAACGGTACGAATCGAGACTTCACGATCCCTTTTGAGTACCTTGCGCGGAAGTTCGTGCAGGTCACGCTCATTGGTACGGATCGGAAACTACTGACCCTCAACATCGACTATCGGTTCACGCTTCGTACCATCATCACCCTGACCAAAAACTGGGGACCTGCTGATGGCTATGAGCGTATCGAGATTCGGCGCTATACCTCTGCGACAGAACGTCTGGTGGACTTCAGTGACGGTTCGATCCTTCGAGCCTACGACCTGAACACCTCTCAGGTTCAATCACTCCACATCGCCGAGGAAGGCCGTGACGTTGCATCCGATACCATCGGTGTGAACAATGACGGTGACCTTGACGCTCGTGGTCGTAAGATCGTCAACTTGGCTGATGCCACGTCAGATGGTGATGCGGTGACCCTTCGGCAAGAAAAGGCGTGGAGTGCTTCTGCACTGAACCAAGCCAACCGAGCTGAGCAACAGGCCAACGCCTCGGCGAACAGTGCCGCGCAGTCCTTCCAAGACGCGAACCGTGCTGGTTCCCAAGCGGCTGCCGCTGCTGACGCTAACACGAAGGCCCAAGATGCTGCCGTGCGATCCTACGGGGACGCCAACAGGTCCACTCAGTTTGCCAATGAGTCGTCTCGACACGCGGGTAACTCTGCTCAGTCAGCGAATGAGGCTGCCATTTGGGCGGCTCACCCGGAGAACGTACCGGCACAGGGGAATAAATACTCGTCCTACCACTACTCCCGTAAGTCCGCTGACAGCGCCGCACAGTCCTTCCAAGACGCTAACCGCTCCAAGAGTGAAGCTGACCGTGCAGCAGTTGAGGCCGGGAAGCTGGGCAACGCGAATGACTTCATGTCCACTCTGGGTGGGATCAACCACGGAACCGGTCTGGTCAGCTTTAAGTCCTCGTATGGTCTGCTTGCTAAGTCCGTGACGACCCATGGCAATGTGGAGTCCTACGGGAACCTGATCAGCCGTGGTAGTGTCGTCGGGGTCTACGCTACGTCCGACTCTACGGGCCCTGAAGGTAACGCACACTTCTGGTTCTACTCGAAGTCCGGTGCGAGCAAGGGGATCATCTACTCCACTGGTGCTGCTGGCGAGATCGTTACGCAGACTGGTAGTGGCTCGAACAGCCTGATCGTGAAGTCTCAAAAGGGTGTAGCCTACATCGGGGACCACCAGATTTACACCAACGGGAACCTGAACCCTGCGTTGTACCTTGTGAAGCATAACGGCACTCACTCGGCCACGAAGATGTTTGCGGCTAACAACCCGTGGACCCTTCAGCCAACCGATCAGAACTACAGCGCCTCTATCGAGCTGCGTGAGGCTGCTGAGCTGAGTACGAAGACTGGTGGCGACATTGTGTTCGCTCCGGGCTTGTCATTCCACTACGGAGGTTACAATATCCGCAAGCTGGTGATGTCCTCGGACTCTCGCCTGAAGTACGGGACCCACAACGGAGGATTCCGAAATGTGAAGGTTACGCCATCCGCTCAGGTATCCCTGTGGGCTGGTAGCTGGTCCCTCGGCCAGACGATCAATATCGGTGCTGGGCGACTTGGGAGGCATATCCATGTGTGGAGTTCTTACGGGTCCCTTCCACGCATGTGTATCTCAGTGCAGATACCTATCGAAGACGGTGCAGCAATCGTTATCTCTTCAGGTGGTGGGCACTGGACAGTCCGGTTCTATGCCGACGGTCGGGCAACAATGATCGACGCCGGTGTTGTTCAACCAATCACTGAAGTCACCATGTGTGACGACGAAGCAAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d06e83c5977fa75428c81cfcb2f47b1947c3e1e945b666a03eb761807a11eef3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6606
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of an novle T7-like phage PFP1 for Pseudomonas fluorescens Li,M. and Zhao,Q. 2018-08-17 — GenBank