Protein

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Genbank accession
QCQ57303.1 [GenBank]
Protein name
chaperone of endosialidase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATTPTNKPIPSEDPRDLKFNAGKIDEVVTSNAHYYTDRFGVRRWTIAGFQYTAEEAIRNYGYITMDSFEDGATLTLPNQTLRYEANGEYYRWDGEFPKIVPAGSTPDSTGEVKLGAWVSVGDASLRANMASTQNEALGDNLVGVKLSSYGAIARTQHDKNADLMSIQDLGAESGIPNPEVDDRVMAVLNANAGLLIPAGFVYVTTKPLHTAAWKSFNIICPNGKATIKSSGGYTMFTQDGPYQFQYCTFKNIIFDGSDITNSANVFMEAAAGDRVAMFTTHNCVWQGFHTVWKASWIAVYHYNPIFKTVNDSGYIVDTPVDDNNPFAAFNLNFMESPIFLDARARMFFRILGGFNFTINNPWFEKNEVFGGAFFYLRQFFNFKINDGWFEYFKGTNLIYLNSGGTENAQSDHIIIDGLHINNSREDSNFKGLILMDPPEHAENFTDPKCVFKNIVEHNSSMAGWYLIKSGDDTNRAESLTEIKNLRLKYGQPACSDGMTIARTQEGANPDIINSIRSLSTQGIQFLPRRYQTTSYRTKNGLWEQQQVVDNDINIAYWKIGYSTVLAWGVDYVRPGRQNAQTCGTSTYAWSGGYTQTAFQITSDRNAKMDEGDIPDAVLDAWGDVQYVSYKLKASVAEKGSKARRHIGVIAQDIKAAFEAHGVDPFEYGILCYDNTPATEAVYDILEDGTQVLLQAAQEAHSAYTVRYEEILCLEAAYMRRELLRLKNS
Physico‐chemical
properties
protein length:729 AA
molecular weight: 81559,21970 Da
isoelectric point:5,15089
aromaticity:0,12346
hydropathy:-0,35844

Domains

Domains [InterPro]
DC_1559
ATT
1–170
DC_1559 IPR011050 IPR030392
G3DSA:2.10.10.80
ATT
63–121
G3DSA:2.10.10.80 IPR012334 cd10144
IPR040775
RBD
63–123
IPR040775 IPR012334 IPR030392
IPR036388
RBD
603–729
IPR036388
QCQ57303.1
1 729
Architecture
ATT
STR
RBD
ATT 1-170 | STR 171-468 | RBD 603-729
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QCQ57303.1
1 729
Domain Start End Length (AA) Confidence
N-terminal 1 179 179 0,9908
Central domain 180 502 324 0,9799
C-terminal 503 729 226 0,9661
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-179
Central
180-502
C-terminal
503-729

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage DS8
[NCBI] 		2565502 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QCQ57303.1 [NCBI]
Genbank nucleotide accession
MK759854 [NCBI]
CDS location
range 12693 -> 14882
strand +
CDS
ATGGCTACCACCCCAACTAATAAACCAATTCCGTCAGAGGATCCTCGCGACCTCAAGTTTAATGCCGGGAAAATTGACGAGGTAGTGACATCTAACGCGCATTACTATACCGATCGCTTCGGCGTGCGCCGCTGGACTATTGCTGGATTTCAATACACAGCAGAAGAAGCTATCCGTAACTATGGCTACATAACGATGGACAGCTTTGAAGATGGAGCAACATTGACGCTTCCCAATCAGACCCTGCGTTATGAAGCGAATGGTGAATATTACCGCTGGGACGGGGAATTTCCCAAAATAGTGCCAGCTGGTTCAACTCCAGATAGCACGGGTGAGGTTAAATTAGGGGCGTGGGTTAGTGTTGGTGATGCCTCCTTGCGTGCTAACATGGCATCAACCCAAAATGAAGCGCTTGGCGATAATTTGGTTGGTGTAAAACTATCATCTTATGGCGCAATTGCCAGGACACAGCATGATAAAAACGCTGATCTGATGTCTATACAAGATCTAGGTGCGGAAAGTGGCATTCCTAATCCAGAGGTTGACGACCGGGTTATGGCGGTACTGAATGCAAATGCCGGGTTGTTAATTCCAGCAGGGTTTGTGTATGTAACCACCAAACCTCTGCACACCGCAGCATGGAAGTCTTTCAATATCATCTGCCCTAACGGGAAAGCCACTATTAAATCATCTGGTGGATACACGATGTTCACGCAGGATGGTCCATATCAGTTCCAGTATTGCACTTTTAAAAATATTATTTTCGACGGTTCTGATATTACAAATAGCGCTAACGTTTTCATGGAAGCTGCTGCCGGTGATCGGGTGGCAATGTTTACCACTCATAACTGTGTATGGCAAGGTTTTCATACTGTATGGAAAGCGTCATGGATTGCTGTTTACCACTATAACCCAATTTTCAAAACGGTTAACGACTCCGGTTACATTGTTGATACCCCTGTGGATGACAACAACCCTTTTGCAGCGTTTAATTTAAACTTCATGGAAAGCCCAATCTTCCTTGATGCTCGCGCCAGAATGTTCTTCCGCATCCTCGGTGGGTTTAACTTCACCATTAACAATCCGTGGTTTGAGAAAAATGAGGTATTTGGCGGGGCGTTTTTCTATTTGCGTCAATTCTTTAACTTTAAGATTAACGATGGCTGGTTTGAATACTTTAAAGGTACAAACCTGATTTATCTTAACAGCGGTGGAACAGAAAATGCTCAATCAGACCATATTATTATAGACGGGTTGCATATCAATAATTCTCGTGAAGATTCTAACTTCAAAGGACTTATTCTTATGGACCCTCCTGAACACGCAGAGAACTTCACAGACCCTAAATGCGTGTTTAAAAACATAGTTGAGCATAACAGCTCAATGGCAGGTTGGTACTTGATTAAATCCGGTGACGATACAAACCGTGCAGAGTCTCTTACAGAAATAAAAAATCTTCGTCTCAAATACGGTCAACCAGCTTGTTCAGACGGAATGACTATTGCAAGAACACAAGAAGGGGCTAACCCCGATATCATAAATTCAATAAGGAGCTTAAGCACGCAGGGAATTCAATTTCTCCCGAGAAGGTATCAAACAACGAGCTACCGCACAAAAAACGGCCTGTGGGAGCAACAGCAAGTAGTTGATAATGATATAAATATAGCGTACTGGAAAATAGGTTATTCAACAGTTCTTGCATGGGGTGTTGATTATGTTCGCCCTGGTAGACAGAATGCTCAAACATGCGGAACATCAACATACGCGTGGTCTGGTGGTTATACGCAAACTGCTTTCCAAATAACATCAGACCGCAATGCTAAAATGGATGAGGGTGACATTCCTGATGCTGTCCTCGACGCCTGGGGTGACGTTCAGTATGTATCATATAAATTAAAAGCAAGCGTGGCAGAAAAAGGCAGTAAAGCCCGAAGACATATTGGGGTCATAGCCCAAGACATCAAAGCGGCATTTGAGGCCCACGGAGTGGACCCATTCGAATATGGCATACTATGTTATGACAATACCCCAGCAACAGAAGCTGTTTACGATATTTTAGAAGACGGTACACAGGTACTGCTTCAGGCTGCACAGGAGGCTCACTCCGCTTACACAGTGCGATACGAAGAAATACTTTGTCTTGAGGCCGCATATATGCGCAGAGAATTATTAAGATTAAAAAACAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ef79d53dea3209998d5cbe6279fb543a949e7ee8949ab9bb524ccf675a0d97ac
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7704
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genome of Shigella Siphoviridae phage DS8 Deng,Z., Lin,L., Zhang,Q. and Deng,X. 2019-10-08 — GenBank