Protein

View in Explore
Genbank accession
YP_007349017.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNPRFTQPKSAVSEMTNLAAVSRIFGYETKNSEYIHVGLDIGSYKVVFDDTTSTCWLVKNATGNVVSYSRSQDTLVVVTSVGTFKLNRAKAVDMELLFKSEQHLQYYYDLLGNWDDAFFMAQVNVFLKGYSPRIILPVAEITITRPILNGVALGDKIHATYPELNFYNSTTGNYLAAWPLVIHGTYRKQQDGGLGGYSGSQIIFRGCNNRDDMTWTQWAIIHSGPNPTEVGQLRRTDTLLKNWPAFADLRDFNIRAINKDGVPISNVHGMYFHYGTQVSAVNMSIYQCYGAGVAVDNTWDSKFENLKVLQCGRMSPVFGQYVTDGNFGPQYQTYAPIHVMRSPLSDNSNFIRFHNCHVEDNMHAAVDVIVSGNSSPVWLTDLHVEAQTGLGGTTNNGQRTIVGLGNFGVTYFGQDAQPGYDYKARPDTGTGGNVVWTGGGMYSDTYSHIARLTRYSAFVLSDMVFPNSGNINVVGGNAAPYVYLSNCVVGDISFTGGNGSLSPLKASNCRIKSLTMDYTYGPQLSNCEISGAFNITNMYSNKPEGGVQLTNCNIGSMSGVIQFGQGIVTLTSTTDPSPFVVYYGHIDVSRYAYYNTNNLVGG
Physico‐chemical
properties
protein length:602 AA
molecular weight: 66122,42500 Da
isoelectric point:6,26408
aromaticity:0,11794
hydropathy:-0,18970

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–93
G3DSA:3.30.2020.50 DC_1709
G3DSA:3.30.2020.50
ATT
1–100
G3DSA:3.30.2020.50
YP_007349017.1
1 602
Architecture
ATT
STR
ATT 1-100 | STR 184-602
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007349017.1
1 602
Domain Start End Length (AA) Confidence
N-terminal 1 115 115 0,9489
Central domain 116 586 472 0,9866
C-terminal 587 602 15 0,8415
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-115
Central
116-586
C-terminal
587-602

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage phiMAM1
[NCBI] 		1262513 Uroviricota > Caudoviricetes > Pantevenvirales > Miltonvirus > Miltonvirus MAM1
Host Serratia sp.
[NCBI] 		616 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Serratia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007349017.1 [NCBI]
Genbank nucleotide accession
NC_020083 [NCBI]
CDS location
range 35198 -> 37006
strand +
CDS
ATGAACCCAAGATTCACGCAACCGAAGAGCGCGGTTTCGGAGATGACCAATCTGGCAGCAGTGTCCAGGATTTTTGGTTATGAAACCAAGAACTCTGAATACATCCATGTCGGCCTGGACATCGGCAGCTACAAGGTTGTGTTTGATGACACGACTTCTACCTGCTGGCTCGTCAAGAACGCCACAGGCAACGTTGTGTCCTACAGCCGATCTCAGGACACTCTTGTCGTTGTCACATCTGTCGGCACATTCAAGCTGAACCGCGCCAAGGCCGTGGATATGGAACTGCTGTTTAAATCAGAGCAGCACCTCCAGTATTATTACGATCTTCTGGGCAACTGGGACGACGCTTTCTTCATGGCACAGGTGAACGTGTTCCTCAAGGGTTACTCCCCAAGAATCATCCTTCCTGTGGCCGAAATCACTATCACTCGCCCTATCCTGAATGGGGTTGCTCTCGGTGACAAAATTCATGCCACGTACCCAGAATTGAACTTCTACAACTCCACCACTGGAAACTATCTCGCTGCTTGGCCTTTGGTCATCCATGGAACCTACCGCAAACAACAAGACGGTGGTCTGGGTGGTTACAGTGGCTCACAGATCATATTCCGTGGTTGCAACAACCGTGACGACATGACTTGGACTCAATGGGCGATTATCCATTCTGGCCCGAACCCAACGGAAGTCGGCCAGCTGCGCCGCACGGACACTCTGTTGAAGAACTGGCCTGCATTCGCTGACCTGCGCGACTTCAACATCCGGGCGATCAACAAAGACGGCGTCCCGATTTCAAACGTCCACGGCATGTATTTCCACTATGGGACTCAGGTCTCAGCGGTCAACATGTCTATCTACCAGTGCTATGGTGCTGGCGTCGCGGTGGACAACACCTGGGACTCCAAATTCGAGAACCTGAAAGTGCTGCAGTGTGGTCGCATGTCTCCTGTGTTCGGGCAATACGTGACTGACGGAAACTTCGGTCCCCAATACCAGACCTATGCTCCGATTCACGTGATGCGCTCGCCTCTGTCTGACAATAGCAACTTCATCCGTTTCCACAACTGTCACGTGGAAGACAACATGCATGCTGCTGTAGACGTGATCGTGTCCGGTAACTCTTCGCCGGTATGGTTGACAGACCTCCACGTGGAAGCGCAGACTGGATTGGGCGGTACGACCAACAACGGCCAACGAACCATCGTCGGCTTGGGTAACTTCGGTGTGACCTACTTCGGTCAAGATGCCCAGCCGGGTTATGATTACAAGGCGCGCCCGGATACCGGTACTGGCGGCAACGTTGTTTGGACTGGCGGTGGTATGTATTCAGACACGTACAGCCATATTGCCCGGCTGACTCGTTATTCTGCCTTCGTTCTGTCTGATATGGTGTTCCCAAACAGCGGCAACATCAACGTCGTCGGCGGCAACGCGGCTCCATACGTGTATCTGTCCAACTGCGTGGTCGGGGATATCAGCTTCACTGGCGGTAACGGTTCACTGTCTCCCCTGAAGGCAAGCAACTGCCGTATCAAATCCTTGACAATGGATTACACTTATGGTCCACAGCTGTCCAACTGTGAGATATCTGGCGCGTTCAACATCACGAACATGTACAGCAACAAGCCGGAAGGTGGGGTACAGCTGACCAACTGTAACATCGGCTCAATGTCTGGTGTAATCCAGTTCGGCCAGGGTATCGTCACTCTTACTTCGACGACTGACCCTTCACCGTTCGTGGTCTACTATGGTCATATCGACGTTTCTCGCTATGCCTATTACAACACCAATAATCTGGTAGGTGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
acdda1cb6d6f086f69b5158f38a4ebffb7dcaa2753e085b9fe308b8525f19b4a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6113
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50