Protein

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Genbank accession
QPZ53370.1 [GenBank]
Protein name
putative tail tubular B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARVAVQLTNFTGGELSPRLDGRNDLQKYPTGCKTLENMIVFPHGSAARRSGSQFVAEVKDSSKETRLIPFEFSTTQTYMLEFGEQYIRFYKDNGQILSGGSAYEISSPYLESELFDIKYAQSADVMYLCHPNHPVKKLSRTGHTSWTLTSVDFTNGPFMDHNIETTTMTASHTNKGQAGTLTISSTTGVNSNQGWLSTDVGRLVHMLDGHVKITGYTSSTVVNMEVLSDISNGSATTDFALGSFSSTTGHPSCVTFFEQRLVFAATLSQPQTLFFSKSGDYENMDDGYHDTVADDDSIIYTIASNQVNAIRFMTATRTLIIGTAGGEFAVSGGGTDIAITPTNILIKKQSNNGAANVDALAVGNATLFLQRARRKLRELAYNFDVDGYVAPDLTILAEHISEGGFKQLSYQQEPNQVIWCARNDGQLVGLTYQREQQVVAWHRHIFGGAFGSGNSVCDSVATIPTDDSEYQTWVIIKRTINGATKRYVEYLHQYDFDETDDTSFNFLDSQLSYSGSPVTNISGLAHLEGQTVSILADGATHPDKVVSSGAIVLERAASKVKVGLSYTSLLQTMRIDAGAQNGTSQSKTKRIYEITARLYESIGIEVGPDLANMERIPFRSSANAMNSGVNVFTGDKEIEFRGNYETDGFIFVRQTQPLPLTILSLYPKLQTNDG
Physico‐chemical
properties
protein length:675 AA
molecular weight: 73927,56270 Da
isoelectric point:5,31799
aromaticity:0,09333
hydropathy:-0,27526

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPZ53370.1
1 675
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,9768
Central domain 156 354 200 0,0639
C-terminal 355 675 320 0,2884
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-354
C-terminal
355-675

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC024P
[NCBI] 		2796518 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidadtus Pelagibacter sp. HTCC1062
[NCBI] 		198252 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPZ53370.1 [NCBI]
Genbank nucleotide accession
MW273920 [NCBI]
CDS location
range 25657 -> 27684
strand -
CDS
ATGGCTAGAGTTGCTGTTCAATTAACGAACTTTACAGGTGGAGAGTTATCACCAAGATTAGATGGTAGAAATGATTTACAAAAATATCCTACAGGATGTAAGACTTTAGAAAACATGATTGTATTTCCTCACGGAAGTGCAGCAAGAAGATCTGGCTCACAGTTTGTAGCAGAAGTAAAAGATAGTTCTAAAGAAACAAGATTAATTCCTTTTGAGTTTAGTACAACACAAACTTATATGTTAGAGTTTGGAGAACAATACATAAGATTTTATAAAGACAATGGTCAAATATTATCTGGTGGTTCAGCTTACGAAATATCTTCACCTTATTTAGAATCAGAATTATTTGATATTAAGTATGCACAAAGTGCTGACGTTATGTATCTTTGCCATCCTAATCATCCAGTAAAAAAATTATCTAGAACAGGTCACACATCCTGGACACTAACAAGTGTTGATTTTACTAATGGTCCATTTATGGATCATAATATTGAAACAACAACTATGACGGCATCGCATACAAACAAAGGTCAAGCAGGAACATTAACAATATCATCTACTACTGGAGTAAACTCTAATCAAGGTTGGTTATCTACAGATGTTGGAAGATTAGTTCATATGCTTGATGGTCATGTAAAAATTACAGGATACACATCTTCAACTGTTGTTAATATGGAAGTATTATCAGATATATCAAATGGATCTGCTACAACAGATTTTGCTTTAGGTTCTTTTAGTTCTACTACAGGTCATCCTTCTTGCGTAACTTTTTTTGAACAAAGATTAGTATTTGCAGCAACCTTATCTCAACCACAAACATTATTTTTTTCAAAGTCTGGTGATTATGAAAACATGGATGATGGTTATCACGATACAGTAGCAGATGATGATTCTATTATTTATACGATTGCTTCTAACCAAGTTAACGCAATTAGATTTATGACAGCTACAAGAACTTTAATTATTGGAACAGCTGGTGGTGAGTTTGCAGTTAGTGGGGGTGGAACTGATATTGCAATTACACCTACAAACATATTAATTAAAAAACAATCTAATAATGGTGCAGCAAACGTAGATGCTCTTGCAGTTGGTAACGCAACTTTATTTTTACAAAGAGCAAGAAGAAAATTAAGAGAACTAGCATATAACTTTGATGTTGATGGTTATGTTGCTCCAGATTTAACAATCCTTGCAGAACATATTTCTGAAGGTGGATTTAAACAATTATCATATCAACAAGAACCTAATCAAGTTATATGGTGCGCAAGAAATGATGGTCAATTAGTTGGTCTAACTTATCAAAGAGAACAGCAAGTAGTTGCTTGGCATAGACATATTTTTGGTGGTGCATTTGGAAGTGGTAATTCAGTTTGTGATAGTGTTGCTACAATTCCTACAGATGATTCTGAATATCAAACATGGGTTATTATAAAAAGAACAATCAATGGTGCTACAAAAAGATATGTAGAATATCTTCATCAATATGACTTTGATGAAACAGATGATACATCATTTAATTTTTTAGATTCACAATTATCTTATAGTGGATCACCTGTTACAAATATTTCTGGTCTTGCTCATCTTGAGGGTCAAACAGTTTCTATATTAGCAGATGGTGCAACACATCCAGATAAAGTTGTAAGTTCTGGAGCAATAGTTTTAGAGAGAGCTGCAAGTAAAGTTAAAGTTGGATTATCTTACACATCTTTATTACAAACAATGAGAATAGATGCAGGCGCACAAAATGGTACATCACAATCTAAAACAAAAAGAATTTATGAAATTACTGCTAGACTTTATGAAAGTATTGGTATCGAAGTTGGACCAGATCTAGCCAACATGGAAAGAATACCTTTTAGATCTTCAGCTAATGCTATGAATAGTGGTGTTAATGTATTTACTGGAGACAAAGAAATAGAATTTAGAGGAAACTATGAAACAGATGGTTTTATATTTGTTAGACAAACTCAACCTTTACCTTTGACGATATTGTCATTATATCCTAAACTTCAAACAAACGATGGATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
e3befe63b0d5e13d5f5f2e176cf43e3814b8f1939a0352ecefdb97b4587224f5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9357
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic diversity, life strategies and ecology of marine HTVC010P-type pelagiphages Du,S., Qin,F., Zhang,Z. and Zhao,Y. — — GenBank