Protein

View in Explore
Genbank accession
YP_008242310.1 [GenBank]
Protein name
pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TSP
Evidence RBPdetect2
Probability 0,88
Protein sequence
MSEFKITKIQVKRANAATWTSQNPFLDDGEFGFERDTNKLKIGNRDVPSRWNDLPYLSTGSGSGDSGFTEEQIQDIVNTLVVAGPGISKVYDDSLNRLTLSITDEVFTTSEKNKLSNIEPGAQVNPSTGDIIDGIDNTLGSTAWKSKLTTEEVQDIMATSLIGGTQTNISVTYNDSNNTFDFFVSANGGGGGVSQEEVEDIVDGLIQTGNGISKIYNDASGTLTISLSGENFTTSEKNKLSGIEAGASADQSPAEIKAAYESSLDTNAFTDAEKTKLGNVPDDQSTINSDIESRTLANDAKVSYPGDQDISGIATNASAIATLDTNKLESTDLKTINGESIVGSGDIEIISGSNEYNNIFRDSSDSGLTGAINGTNTSFTVSNGSYNPGTLNVFVEGQLFTAGHGVIETTPATGVFTFENAPETGTSLYVTYQVGNTVTDIVDGSIIESKLSSDVISNFKNTPNGYVSPREYNSIMDGVTDDRDTFESTLIAARAVGKRVIVDRDIFLDVSETSSSIILESGDWIEGINGANIIVNNLLTPAFLMVLTSNITFKNINIVYDQTYDATVSGSTEDSNNFISFLNNYLVSNRGITLTNSNFGWTGRSSLRYTFMIDACEDILFDNVTVKSKGETADKFMIGAFKLKWEWAKNSTITSNVGDTSICKNITFKDIILDGYIMGIQGVVDGFKVDNFKAYRYSDVQTASGTEIGGTAFWMAPPHLFYLNTDASPLYNTQNVEIRNTIDYGILVGSNDHRSETSGYCTSLKMINTVTNVYVDNYTSLRRDGLGEIQDMSNATYKNIYSESEIGIFDSSVGFNAFRFLGTIENVHFENVTLKDKSTYLEIYPLDLASGNNSSMTNFNVIIEGELNTDIYGCYGISGSNNKITNSFLKIGNHTSTQDFRGVIYHDNTALLSGANNHYEVIVQGWRDLGSIPSSTRPRVLLASALNPNNNYAKLVDISNNYVAEQVNGVLTGTLIKSEIVTLGTGTSQALSMVIPTGFALDKVVSETITALNSGTNVTIGTDTTTNKANLIANVYETTGKVDFNINENSHYSGNRSIYINSDTDFASSGVIKVTIELKRYSETSFSKSDNVIANVTDNSVTTSKIVDANVSLAKLSPSVQSTLNQAILSYETLEENEILVVKSDGTIEGVPNFTFTGALLQVGSTASGIYSQLGDNTFSFARNADSSIRQIGGADINFQTQNSSASNTTRLKIEGGSDNGFVELYNSTLKKNTLDTAPANSSATGTAGEVRFTATGVYICIATNSWINGAGTTF
Physico‐chemical
properties
protein length:1275 AA
molecular weight: 137144,34980 Da
isoelectric point:4,43193
aromaticity:0,08392
hydropathy:-0,23843

Domains

Domains [InterPro]
DC_0435
ATT
1–66
DC_0435 IPR011050
SSF69349
STR
8–62
SSF69349 DC_1402 DC_0969
YP_008242310.1
1 1275
Architecture
ATT
STR
RBD
ATT 1-461 | STR 462-887 | RBD 888-1084 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008242310.1
1 1275
Domain Start End Length (AA) Confidence
N-terminal 1 481 481 0,9959
Central domain 482 971 491 0,9831
C-terminal 972 1275 303 0,7488
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-481
Central
482-971
C-terminal
972-1275

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage phi14:2
[NCBI] 		1327990 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cellulophaga baltica
[NCBI] 		76594 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008242310.1 [NCBI]
Genbank nucleotide accession
NC_021806 [NCBI]
CDS location
range 76800 -> 80627
strand -
CDS
ATGTCGGAATTTAAAATAACAAAAATCCAAGTTAAAAGAGCTAACGCTGCGACATGGACTTCACAAAATCCTTTCTTAGATGATGGAGAATTTGGATTTGAAAGAGATACCAATAAACTTAAGATTGGTAATAGGGATGTTCCCAGTAGATGGAATGATTTACCTTATTTAAGTACAGGTTCTGGATCTGGAGATTCAGGTTTTACTGAAGAACAAATACAAGATATAGTAAACACTTTAGTTGTAGCTGGACCAGGGATTAGTAAAGTATATGATGATTCTTTAAATAGATTGACATTGTCTATTACTGACGAGGTATTTACAACTTCAGAAAAAAATAAGTTATCTAATATTGAACCTGGAGCACAAGTAAATCCATCTACAGGTGATATTATAGATGGTATCGACAATACATTAGGTAGTACAGCTTGGAAATCTAAATTAACTACTGAAGAAGTTCAAGATATAATGGCTACCTCATTAATAGGTGGAACTCAAACTAATATATCTGTAACTTATAATGATTCAAATAACACGTTTGATTTCTTTGTATCCGCTAATGGTGGAGGCGGAGGAGTCTCTCAAGAAGAAGTAGAGGATATAGTGGACGGTTTAATACAAACTGGAAATGGTATATCAAAAATTTACAATGATGCATCAGGAACGCTTACAATAAGTTTATCAGGTGAAAACTTCACTACTTCTGAAAAGAATAAACTATCAGGTATAGAGGCAGGGGCTTCAGCGGATCAATCTCCAGCTGAAATAAAAGCTGCATATGAATCTTCACTTGATACCAATGCTTTTACAGATGCTGAGAAAACTAAATTAGGTAATGTACCAGATGATCAATCTACTATAAATAGCGATATTGAAAGTAGAACACTAGCTAATGATGCTAAAGTATCTTATCCTGGTGATCAAGATATATCAGGTATTGCTACAAATGCATCAGCTATAGCAACTTTAGATACTAATAAACTAGAATCTACAGATTTAAAAACTATAAATGGGGAATCTATTGTAGGTTCTGGAGATATAGAAATTATAAGTGGTAGTAATGAGTATAATAACATTTTTAGAGACTCAAGTGACTCAGGTCTTACTGGAGCTATAAATGGCACTAACACATCTTTCACAGTATCTAATGGGTCTTATAATCCAGGAACACTTAATGTATTTGTTGAAGGACAATTATTCACAGCAGGTCATGGTGTTATAGAGACTACTCCTGCAACTGGAGTTTTCACATTTGAAAATGCTCCTGAGACAGGGACTAGTTTATATGTAACATATCAAGTTGGTAATACAGTTACTGATATAGTAGATGGTTCTATTATTGAAAGTAAACTATCATCTGATGTAATATCAAACTTTAAGAATACTCCAAATGGATATGTGTCTCCTAGAGAATACAATTCTATTATGGATGGAGTTACTGATGATAGAGACACTTTTGAATCGACCTTAATTGCAGCAAGAGCAGTAGGTAAAAGAGTAATAGTGGACAGGGATATATTCTTAGATGTATCAGAAACATCATCATCTATTATTTTAGAAAGTGGCGATTGGATTGAAGGTATAAATGGAGCTAATATTATAGTTAACAATCTGTTAACTCCAGCATTCTTAATGGTTCTAACAAGTAATATAACTTTTAAAAATATAAACATTGTTTATGATCAAACATATGATGCTACTGTAAGTGGTTCTACTGAAGACTCAAACAATTTTATTTCATTTTTAAATAACTATTTAGTTTCAAATAGAGGAATAACTTTAACTAATTCAAATTTTGGATGGACAGGTAGAAGCTCATTAAGATATACTTTTATGATTGATGCATGTGAAGATATATTATTTGATAATGTAACAGTGAAATCTAAAGGTGAAACTGCGGATAAGTTCATGATCGGAGCATTTAAGCTTAAATGGGAATGGGCTAAAAACTCTACTATCACATCGAATGTAGGTGATACATCTATATGTAAAAATATAACTTTTAAAGATATCATTTTAGACGGGTATATAATGGGTATCCAAGGTGTTGTAGACGGATTTAAAGTAGATAATTTTAAAGCGTACAGGTACAGTGATGTTCAAACAGCATCTGGAACTGAAATAGGTGGGACAGCTTTTTGGATGGCACCTCCACACCTATTCTATTTGAACACTGATGCTTCTCCTTTATACAATACTCAAAACGTAGAAATAAGGAATACAATTGATTACGGAATATTGGTAGGTTCTAATGACCATAGGTCAGAAACTAGCGGATACTGTACATCATTAAAAATGATAAATACAGTAACCAATGTTTATGTTGATAATTATACATCCTTAAGAAGAGACGGTTTAGGTGAGATTCAAGACATGAGTAATGCTACTTATAAAAACATCTACTCAGAATCAGAAATAGGTATCTTTGATTCAAGTGTAGGATTTAATGCTTTTAGATTTTTAGGAACAATTGAAAATGTTCATTTTGAAAATGTAACATTAAAAGATAAGTCTACATATCTAGAAATATATCCTTTAGATTTAGCATCAGGTAACAACTCATCAATGACTAACTTTAATGTTATAATTGAAGGTGAGTTAAATACAGACATTTACGGTTGTTACGGTATATCAGGAAGTAATAATAAAATTACAAACTCTTTTTTAAAGATAGGTAATCATACTTCAACACAAGATTTTAGAGGTGTAATATACCACGATAATACAGCTTTGTTATCAGGAGCTAACAATCACTATGAAGTAATAGTTCAAGGATGGAGAGACTTAGGTTCTATTCCTTCATCTACTAGACCAAGAGTGTTACTTGCTTCTGCATTAAATCCAAATAACAACTATGCAAAACTAGTTGATATTAGTAATAACTATGTAGCTGAGCAAGTAAATGGAGTTTTAACAGGTACTCTTATTAAGTCTGAAATTGTAACATTAGGAACTGGTACAAGTCAAGCTTTATCAATGGTTATACCAACAGGTTTCGCTTTAGATAAAGTAGTCTCAGAAACTATTACAGCATTAAATTCGGGAACAAACGTTACAATAGGAACAGACACCACTACAAACAAAGCTAATTTAATAGCTAATGTGTATGAGACAACAGGTAAAGTTGATTTTAACATAAATGAAAATTCTCATTACAGTGGAAACAGGTCTATATACATCAACTCAGACACCGACTTTGCTAGTTCTGGAGTAATAAAAGTAACAATAGAGTTAAAAAGATACAGCGAAACATCATTTAGTAAGTCAGATAATGTAATAGCTAATGTAACAGATAATTCAGTAACAACTTCCAAAATAGTTGACGCTAATGTTTCTTTAGCTAAACTAAGTCCTTCTGTACAATCAACACTTAACCAGGCAATATTAAGCTATGAGACTTTAGAGGAAAACGAGATTTTAGTGGTTAAGTCTGATGGTACAATCGAAGGTGTTCCTAATTTTACATTCACAGGAGCATTACTACAAGTTGGTTCTACAGCTTCAGGAATTTATAGCCAACTAGGAGATAATACATTTTCTTTTGCTAGAAATGCAGATAGTTCAATACGACAAATAGGTGGTGCAGACATAAATTTTCAAACTCAAAATTCTTCTGCATCAAACACTACCAGATTAAAAATAGAAGGTGGTTCTGATAATGGTTTTGTAGAGCTGTATAACTCCACATTAAAAAAGAACACTTTAGACACAGCTCCTGCAAACTCATCTGCAACAGGAACAGCAGGGGAAGTAAGATTTACAGCAACAGGAGTTTACATATGTATTGCAACAAATAGCTGGATTAATGGAGCGGGAACAACATTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bc53d9df91e31010b124e229c873ed0f928ceb41db2f5a445a5a88fe0381f55b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6188
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50