Protein

View in Explore

Genbank accession

QQG33314.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

Evidence RBPdetect

Probability 0,89

Evidence RBPdetect2

Probability 0,96

Protein sequence

MAQYEDKVVEVLVTLPEPSASTSGGSGAPFTGIETQDTVSTTLIGDGTQSSPLQANINISRRSGNRLQVVSTSSEQGLYVAGSDTKVSAKDGNTVTYISAQEAANAGNPALEGVYSDPVNVSTTSPKKTLEIKADPTGKAKTQIDVIVDPDSMNALKVGTAGLSVPVSVAQDNTLEIRQGALYVRPQETKISQDPNNKIQVKSDGIYVDTVKGDKGDTGATGPAGPQGPQGDPGPQGPQGPQGDKGDKGDTGDVGPAGATGPAGAQGARGPEGPKGPAGIGINVIDQLDEVSQLPAVAEMELGDTYVIGQNFWTVVNENNVKQWKDIGNFAGPEGLSAYEVAEGAGFVGTVDEWLESLKGADGIGLQILGSFPDPSYLPDEGNKPGDCYIIQDMMYVWTGDEDGWQTVGQIGPEGKSAYQVWLANGHTGSQVDFLNSLIGPQGPKGDKGDKGDTGADGTNANAINLLGKVADEASLPAGADAGDAYLIGTNVWVSTGNDNWENLGAFQGPKGDQGDVGPAGPKGDKGDAGDVGKDNYALAVENGFQGSLSDYLASLKGAKGDTGPTGPRGLTGPQGAKGEVGEGLAILGSKADPSELPSNPVTGDAWLIGEDLYIFNGTAWENAGPVRGPKGDTGATGPAGAKGDKGDQGEKGDKGDQGDVGPAGPEGPQGTGLTPKGSVPTVADLPDQDNTKGDFWAVEEDGNGYAWDGLQWVVTGLTRGPQGEKGDKGDKGDKGDPGDTGATGAGVIPKGTVTSAATLPPTGNTVGDYYVTEDTGTGYSWNGTTWVDLGVVRGPQGPQGDKGDTGDQGPQGVKGDTGATGPQGPQGDIGPGVEIMGKLNSTSELPGTGQLGQGYLIDGDFWGWTGSAYENLGRIQGPVGPTGPTGDPGPTGPQGVKGDKGDQGSLWIVFDHDPGPADGRVGDYFLNSSTLQFFRKTNATTWAPMGYMGGGNVYDSPKDGKQYARIDGDWELVDVLEAPQDSGYYVRVNGAWQKLDRYDLRVMSATGALDASVSNVFTVDGTTSKAITISNLPAGRAMTVVVKFLGKGGSMTWPSPMAWSNGTQPALGTTRTILTFFWDGTDLTGVQAMTVD

Physico‐chemical properties

protein length:	1093 AA
molecular weight:	111886,99930 Da
isoelectric point:	4,27653
aromaticity:	0,06587
hydropathy:	-0,51729

Domains

Domains [InterPro]

DC_1512
ATT
1–89

DC_1512 DC_0915 DC_1340 IPR008160 G3DSA:6.20.230.10

IPR008160
STR
219–274

IPR008160 G3DSA:1.20.5.320 DC_1593

IPR050149
Unmapped
508–918

IPR050149

DC_1340
STR
531–656

DC_1340

QQG33314.1

1 1093

Architecture

ATT

STR

ATT

STR

ATT 1-89 | ATT 117-385 | STR 423-951 | ATT 952-977 | STR 978-1093

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1512	ATT	DC_1512	1	89	Novel HMM	DC_1512	N-terminal	Low	Positional only	27 proteins / 27 hits
DC_0915	ATT	DC_0915	117	385	Novel HMM	DC_0915	N-terminal	Low	Positional only	48 proteins / 48 hits
IPR008160	STR	DC_0536	219	274	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1340	STR	DC_1340	423	550	Novel HMM	DC_1340	Central	Low	Positional only	192 proteins / 192 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	507	553	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
IPR050149	Unmapped	-	508	918	InterPro	Collagen superfamily	-	-	-	-
DC_1340	STR	DC_1340	531	656	Novel HMM	DC_1340	Central	Low	Positional only	192 proteins / 192 hits
IPR008160	STR	DC_0536	629	671	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1593	STR	DC_1593	666	1093	Novel HMM	DC_1593	Central	Low	Positional only	123 proteins / 123 hits
G3DSA:6.20.230.10	ATT	G3DSA:6.20.230.10	952	977	Merged direct domain	G3DSA:6.20.230.10	N-terminal	Low	Positional only	46 proteins / 46 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Pectobacterium phage PcCB7V [NCBI]	2798043	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Pectobacterium sp. [NCBI]	1913084	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

QQG33314.1 [NCBI]

Genbank nucleotide accession

MW367417.1 [NCBI]

CDS location

range 7110 -> 10391
strand +

CDS

ATGGCACAATATGAAGATAAGGTCGTGGAAGTTCTGGTGACTCTCCCGGAACCGTCTGCGAGCACCTCTGGTGGTTCTGGTGCGCCTTTCACGGGCATCGAAACCCAAGACACCGTATCCACCACGCTGATTGGTGATGGTACTCAATCCTCCCCTCTGCAAGCAAACATCAACATCTCCCGTCGTTCAGGAAACCGCCTCCAAGTGGTGAGCACCTCCAGTGAGCAGGGTCTGTATGTTGCTGGCTCCGACACCAAGGTGTCTGCTAAGGATGGGAACACCGTAACTTACATCTCCGCCCAAGAAGCTGCTAACGCTGGCAACCCGGCCCTGGAAGGTGTATACTCTGATCCGGTGAACGTGTCAACCACGTCACCGAAGAAGACTCTGGAAATCAAGGCTGATCCTACCGGGAAAGCCAAGACCCAAATCGACGTGATCGTTGATCCAGATTCCATGAACGCCCTGAAGGTAGGAACTGCTGGCCTGAGCGTTCCTGTTTCTGTGGCTCAAGACAACACGCTGGAAATCCGCCAGGGTGCTCTGTACGTTCGCCCGCAAGAGACTAAAATCTCCCAAGACCCAAACAACAAGATTCAAGTCAAGTCTGACGGGATTTACGTTGACACTGTGAAAGGTGATAAAGGGGATACCGGGGCAACTGGCCCGGCAGGCCCTCAAGGCCCACAGGGAGACCCGGGTCCTCAAGGTCCGCAAGGCCCGCAGGGCGATAAGGGCGATAAAGGTGACACCGGGGACGTAGGACCAGCGGGGGCAACTGGCCCGGCAGGGGCACAGGGTGCTCGTGGCCCAGAAGGTCCGAAAGGCCCGGCTGGTATTGGTATCAACGTCATCGATCAGCTTGACGAAGTTTCTCAGCTTCCGGCTGTTGCGGAAATGGAACTGGGTGACACTTACGTTATTGGACAGAATTTCTGGACCGTTGTCAACGAAAACAACGTGAAGCAGTGGAAGGACATCGGTAACTTCGCGGGGCCTGAAGGTCTGTCTGCTTATGAAGTTGCAGAAGGCGCGGGCTTCGTTGGTACTGTTGATGAGTGGCTGGAATCCCTGAAAGGGGCTGACGGTATCGGTCTGCAAATTCTTGGTTCCTTCCCTGACCCGTCCTATCTGCCTGATGAAGGTAACAAGCCTGGTGACTGCTACATCATCCAAGACATGATGTATGTGTGGACAGGTGATGAAGATGGATGGCAGACTGTAGGTCAGATTGGTCCAGAGGGTAAATCTGCGTATCAGGTATGGCTGGCTAACGGTCACACCGGATCTCAGGTTGACTTCCTGAACTCCCTGATTGGCCCACAAGGACCGAAAGGTGATAAAGGCGACAAAGGTGATACGGGTGCTGACGGTACTAACGCCAACGCCATCAACCTCTTGGGTAAAGTCGCAGACGAAGCGAGCCTCCCGGCTGGCGCGGATGCAGGCGATGCCTACCTGATCGGAACTAACGTTTGGGTATCCACTGGGAATGACAACTGGGAAAACCTCGGTGCCTTCCAAGGCCCTAAAGGTGATCAGGGGGATGTAGGCCCTGCTGGCCCAAAAGGCGACAAGGGAGACGCAGGTGACGTAGGCAAAGACAACTACGCATTGGCGGTAGAGAACGGGTTTCAAGGTTCCCTGAGCGACTACCTGGCATCTCTCAAAGGTGCGAAGGGCGACACAGGCCCGACTGGTCCACGTGGTCTTACTGGCCCGCAGGGTGCGAAAGGGGAAGTAGGGGAAGGTCTCGCGATCCTCGGATCAAAAGCTGATCCTTCAGAACTGCCTTCCAATCCGGTAACTGGTGACGCATGGCTGATCGGAGAAGACCTGTACATCTTCAACGGCACTGCTTGGGAGAATGCAGGCCCTGTCCGTGGTCCGAAAGGTGACACCGGAGCCACTGGCCCGGCTGGAGCTAAGGGTGACAAGGGTGACCAAGGCGAGAAAGGCGACAAGGGTGACCAAGGTGATGTCGGCCCGGCTGGCCCAGAAGGTCCGCAGGGTACTGGTCTGACGCCGAAAGGTTCTGTTCCTACAGTAGCAGATCTTCCTGACCAAGACAACACCAAAGGCGATTTCTGGGCTGTAGAGGAAGATGGCAATGGTTACGCTTGGGATGGGTTGCAGTGGGTTGTTACTGGCCTGACTCGCGGCCCGCAAGGCGAGAAAGGCGACAAGGGCGACAAAGGGGATAAAGGTGATCCGGGGGATACTGGTGCCACAGGCGCAGGTGTTATTCCGAAGGGAACTGTAACCTCTGCTGCGACCCTGCCTCCTACCGGGAACACCGTCGGTGATTACTACGTCACTGAGGATACTGGGACCGGATACTCTTGGAACGGGACAACCTGGGTTGACTTGGGAGTTGTGCGTGGACCGCAAGGACCGCAGGGCGACAAAGGTGATACCGGAGACCAAGGCCCACAAGGTGTGAAAGGCGACACTGGTGCTACAGGCCCTCAAGGCCCGCAAGGTGACATCGGCCCCGGTGTTGAGATCATGGGCAAACTGAACAGCACTTCAGAACTGCCTGGAACCGGGCAACTGGGTCAGGGTTACCTGATTGATGGCGACTTCTGGGGATGGACTGGCTCTGCCTACGAAAACCTTGGTCGTATCCAGGGTCCGGTCGGTCCTACTGGACCTACTGGTGACCCGGGTCCTACTGGCCCACAGGGTGTTAAGGGTGACAAAGGTGATCAAGGTTCCTTGTGGATCGTGTTCGACCATGACCCAGGCCCTGCCGACGGTCGTGTTGGCGACTACTTCCTGAACTCCTCAACGTTGCAGTTCTTCCGTAAGACGAACGCAACCACTTGGGCACCGATGGGTTACATGGGTGGCGGTAACGTTTACGACTCTCCTAAAGACGGTAAGCAGTACGCCCGTATTGACGGAGATTGGGAACTGGTTGACGTTCTGGAAGCGCCTCAAGATTCTGGATACTACGTCCGTGTGAACGGTGCGTGGCAGAAACTGGATCGCTACGACCTGCGTGTCATGTCTGCAACTGGCGCACTGGATGCTTCTGTATCCAACGTGTTCACCGTTGACGGAACCACGTCTAAAGCAATCACCATCTCCAACCTGCCAGCAGGCCGGGCGATGACTGTGGTTGTGAAGTTCCTCGGAAAAGGCGGCTCTATGACTTGGCCTTCTCCGATGGCATGGTCTAACGGCACCCAGCCAGCACTTGGTACTACCCGTACCATCCTGACGTTCTTCTGGGACGGCACGGACCTGACTGGCGTTCAGGCGATGACTGTAGACTAA

Genome Context

Tertiary structure

PDB ID

57f064f43481b654f3f883256d7076d7df813525b9a261cb9cafeb7156d7999f

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6626

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Complete genome sequences of novel berlinvirus and novel certrevirus lytic for Pectobacterium car. car	Petrzik,K., Kmoch,P., Vacek,J. and Brazdova,S.	2021-04-29	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature