Protein

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Genbank accession
YP_010668888.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,88
Protein sequence
MSGKKDKVVKVEEQTLLEPTPVDVKPNNDVFDSMALEMTPHAKSNGIPELLIGKTKLEMIPCEDPPARRYYMGGHGTPYHRGKNAPYVCQPTGILEAPKWYQAHYRGLEIYAAGDTTIELGEYVTGRSDRKSVLVVVDSTVKIQHGEVSATLVIGESILETDRIHVWGSDTNISKSTLICLGGNITLEDSDVRDVRVNSGCDIRLDRSSIENITLAPILSLALESCSITSHDATYAYVDTNANTTLHISRCRDVKLPVVELQDRKIEIYHRAHFGMLQGVGGAGFARSTDNGMVISGKEYDIITISTFLKMMEQGDGYQELVSYSDKFEPLYNAFFGDRSYVRPEKNSEFGAYEEMFINYLGVILARLELFKIIESVKRGEK
Physico‐chemical
properties
protein length:382 AA
molecular weight: 42575,89780 Da
isoelectric point:5,39654
aromaticity:0,07853
hydropathy:-0,28298

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010668888.1
1 382
Domain Start End Length (AA) Confidence
N-terminal 1 175 175 0,2297
Central domain 176 371 197 0,4091
C-terminal 372 382 10 0,9899
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-175
Central
176-371
C-terminal
372-382

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage D6
[NCBI] 		2593322 Uroviricota > Caudoviricetes > Chimalliviridae > Ludhianavirus D6 >
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010668888.1 [NCBI]
Genbank nucleotide accession
NC_070958 [NCBI]
CDS location
range 141108 -> 142256
strand +
CDS
ATGTCCGGCAAGAAAGATAAGGTTGTTAAAGTAGAAGAACAAACCCTCCTCGAACCCACGCCAGTGGACGTCAAACCCAATAACGATGTGTTCGACTCTATGGCGTTGGAAATGACCCCTCACGCCAAATCCAACGGTATTCCTGAACTGTTGATCGGGAAGACCAAATTGGAAATGATCCCATGTGAAGATCCGCCCGCGCGCCGTTACTATATGGGTGGACATGGTACTCCATACCACCGGGGTAAGAACGCACCATACGTATGTCAACCCACCGGCATCCTGGAAGCACCGAAATGGTACCAAGCGCATTACCGTGGGTTGGAGATCTATGCCGCTGGTGACACTACCATCGAACTGGGTGAGTATGTAACAGGTCGTTCCGATCGTAAATCGGTGCTCGTTGTTGTGGACTCCACCGTCAAGATACAGCACGGTGAAGTATCAGCCACTTTGGTGATCGGGGAATCGATCCTGGAAACTGATCGCATTCACGTGTGGGGTTCCGACACCAACATTTCCAAATCCACCCTTATCTGTCTGGGTGGAAACATCACTCTGGAAGATAGCGATGTCAGAGATGTCCGCGTCAATTCTGGCTGCGATATCCGACTCGATCGTTCGAGTATCGAGAACATCACCCTGGCTCCGATTCTCAGTCTGGCATTGGAGAGCTGCTCCATCACTTCCCATGATGCAACCTACGCATATGTCGACACCAACGCCAACACGACACTGCACATCAGTCGGTGCAGGGATGTAAAACTCCCGGTGGTGGAACTCCAAGATAGGAAAATCGAGATCTATCACCGCGCCCACTTTGGGATGCTTCAGGGTGTGGGTGGTGCTGGGTTCGCCAGGTCTACCGATAACGGTATGGTCATCAGCGGTAAGGAATATGATATCATCACCATCTCTACGTTCTTGAAGATGATGGAGCAAGGCGATGGTTATCAAGAACTGGTTAGTTACAGTGACAAGTTCGAGCCGCTTTACAATGCGTTCTTTGGCGATCGTTCTTACGTACGTCCCGAAAAGAATTCTGAGTTCGGGGCTTACGAAGAAATGTTCATCAACTATCTGGGTGTCATTCTGGCCAGGTTGGAGCTGTTCAAAATCATCGAGAGTGTAAAACGAGGTGAGAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5bb731bb7fba9552664eb5fa2a233e7c9b8c281ccadca5f33258cb2c5b0eaa75
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4025
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Aeromonas hydrophila bacteriophage D6 Rai,S., Tyagi,A., Kumar,N. and Singh,N. 2020-06-10 — GenBank