Protein

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Genbank accession
YP_010113930.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGFYAKGSPGTVLHLTESSDARNGVGNDTIFHSSMPHVFITDEWTIPLTNFDASAVGDTYGGWNILGKYKVGSLPAGAINAIKNSSTVTLIEVFYTVNGKEYSKVINGHSITSSFDTGDAWDDWDGRMDFHDYDLHVTMRPGIGVHVGFFVGNKSTDIRQATLDQDSFGINTMRIGGDSEANSFNVARDRLWRCGYNNSFVTIDTSKFYRVGFYGGTYSGILVPPFNNLIGAPRGALANASQKFEKDMQHYSDRDRYANWWLNHRKLGTISGTTKWHGNRNASYMELWDYPTVTFTKIIIRKLNLTYNVNSGYSLTNIVPLTGEIKLDRNDFKVGGVSIKTLAAKMLHQINPSTTGSGYTYMYANPSYDGNGLPNMRSAMPLLGVASDRSINTTSGSSMVSLAPNQHNFLGIQDMKNSGNGWVITPDSIGTQTRTIWGKGGSMALKLLPGATKRVTFGGSEIALANPESKVIATVALGLATNRSSTIIMNLNTTDVRVWLPNEAYYARVGGGIMKLSSNTVPNVGGDHSILVLPINKYVQFMEVKSYKSDSGWADFSDPVVNAWLTNIAFWFRNLGNGNVEISVSHRGAPMPGKKGGNGQSLNANPKFHVPAYTMSIAALS
Physico‐chemical
properties
protein length:621 AA
molecular weight: 67757,53450 Da
isoelectric point:9,12081
aromaticity:0,10467
hydropathy:-0,25765

Domains

Domains [InterPro]
IPR059609
RBD
1–621
IPR059609
YP_010113930.1
1 621
Architecture
RBD
RBD 1-621
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010113930.1
1 621
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0061
Central domain 11 239 230 0,8806
C-terminal 240 621 381 0,7307
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-239
C-terminal
240-621

Taxonomy

  Name Taxonomy ID Lineage
Phage Providencia phage PSTCR5
[NCBI] 		2783547 Uroviricota > Caudoviricetes > Demerecviridae > Priunavirus PSTCR5 >
Host Providencia stuartii
[NCBI] 		588 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010113930.1 [NCBI]
Genbank nucleotide accession
NC_055910 [NCBI]
CDS location
range 46519 -> 48384
strand -
CDS
ATGGGTTTTTACGCAAAAGGGAGTCCTGGTACTGTCCTACATTTAACCGAATCCAGTGATGCTAGAAATGGGGTTGGCAATGATACTATTTTTCACTCCTCAATGCCACATGTGTTCATCACTGATGAATGGACTATTCCACTAACAAATTTTGATGCTTCCGCTGTGGGAGATACATACGGTGGTTGGAATATTCTTGGCAAGTATAAAGTAGGGTCACTACCTGCGGGTGCTATAAATGCTATTAAAAATAGTTCTACTGTTACACTTATTGAAGTATTCTACACAGTAAACGGTAAGGAATACTCTAAAGTAATTAATGGCCATAGTATAACCTCCTCGTTTGATACGGGGGATGCCTGGGATGACTGGGATGGGCGTATGGACTTCCATGACTACGATTTACATGTAACAATGCGCCCAGGGATAGGTGTACATGTAGGTTTCTTTGTGGGCAATAAATCTACTGATATTAGACAAGCCACCCTTGATCAAGATTCTTTTGGTATCAATACTATGAGAATTGGTGGTGATAGTGAGGCTAACAGTTTCAATGTTGCTAGGGATAGATTATGGAGGTGCGGGTATAATAACTCATTTGTAACCATTGACACCAGTAAGTTCTATCGTGTAGGATTTTATGGGGGGACTTACTCAGGGATTCTGGTACCTCCATTTAACAATTTAATAGGAGCCCCCCGAGGGGCTTTAGCTAACGCTTCACAGAAATTCGAAAAGGATATGCAGCATTATAGTGACCGCGATAGGTACGCTAACTGGTGGTTAAATCATCGTAAACTAGGTACTATTTCTGGTACTACTAAATGGCATGGAAACCGGAATGCCAGCTATATGGAGTTGTGGGACTACCCTACGGTAACCTTTACCAAGATTATTATCAGAAAGCTGAATCTAACTTATAATGTTAACTCAGGGTATTCTCTGACTAATATAGTCCCTTTAACAGGGGAGATTAAGCTAGATAGGAATGACTTTAAGGTGGGGGGAGTATCTATAAAAACCTTAGCAGCCAAAATGCTGCATCAAATCAATCCTAGTACTACAGGGTCTGGTTATACCTATATGTATGCTAATCCATCATATGATGGTAATGGTCTTCCCAATATGAGGTCTGCAATGCCCTTATTGGGGGTAGCTTCAGATAGGAGTATTAATACTACCTCGGGGTCCTCCATGGTAAGTCTAGCACCAAACCAACATAACTTCCTTGGTATTCAAGATATGAAAAATTCCGGAAATGGGTGGGTAATTACCCCCGATTCTATAGGAACTCAAACTCGGACGATATGGGGGAAAGGTGGGTCTATGGCGCTTAAACTACTTCCTGGGGCAACCAAAAGAGTTACTTTCGGGGGATCTGAGATCGCACTGGCAAATCCCGAAAGCAAGGTTATTGCCACAGTAGCACTAGGCCTAGCTACAAATAGATCTTCCACAATTATAATGAACCTCAATACTACTGATGTTCGAGTATGGTTGCCAAATGAGGCATATTATGCTAGAGTAGGCGGTGGTATTATGAAGCTCTCCAGTAATACTGTCCCAAATGTAGGAGGAGACCATAGCATTCTTGTCCTACCCATAAATAAATATGTGCAATTTATGGAAGTAAAATCATATAAGAGTGATAGTGGGTGGGCTGACTTCTCAGATCCCGTAGTAAACGCTTGGCTTACAAATATCGCATTCTGGTTCAGGAATTTAGGTAATGGTAATGTGGAGATATCAGTATCTCACAGAGGTGCCCCGATGCCTGGTAAGAAAGGCGGTAATGGTCAGTCTCTTAATGCTAATCCCAAGTTTCACGTACCAGCGTACACTATGAGCATTGCTGCTCTTTCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
400ca7e21ca5323a304bf82de913f083fcc4fbbf23be3453c7b7e4a7dc6274a6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2239
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel bacteriophages targeting Providencia spp. as potential agents for phage therapy Rakov,C., Alkalay-Oren,S., Coppenhagen-Glazer,S. and Hazan,R. 2021-04-02 — GenBank