Protein

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Genbank accession
YP_011852606.1 [GenBank]
Protein name
L-shaped tail fiber
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,95
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MALKTKIIVQQILNIDDTTTTASKYPKYTVVLGNSISSITAGELTAAVEAAAESAAAAKDSEIAAKDSENKAKDSEIQAGIHAGASEASATQSAASAAESERQANLSQGSAENSAASALESKNFKDASELAAQNAEQSKILAEQAQRAAEAAQSGAQASENKASAFATQAAASSASAGDFAAAAKQSELNAKTSETNAATSEVEAETQAETATTEANRAKAEADRAAQIVDSKLDKEDISGFIKVYKTKEEADADVSSRVLGEKILVWNQTDSKYGWYKVAGTAEAPVLELVETEQKLVSINNVRADDAGNVQITLPGGNPSLWLGEVTWFPYDKDSGVGYPGVLPADGREVLRVDYPDTWEAIEAGLIPSVTEEQWQAGATLYFSTGNGTTTFRLPDMMQGQAFRAAAKGEENAGNIKEQIPYITMINGKAPADDGTITLGNAADKNVWNGVDGEVLLRGAFGLGGTGLILNEPDAVSFFKAMRAFGSGYYRNDSESNPVIPKYSAGFYSKTADTHTFICSAYGNGVTFVATINDALLDGENPTVHTNILYGTANKPDLNTDTQGVLGVEKGGTGATTQKGARLNLDTPVGSRAIGMPNNSDVLAFMKSSAESGYYSSGNIVTGVPETAGWYMFDLHVHGKNAAGEMEYGNVYCTTSAGAIWYTLMEVGVWQPWRRLTTEHGIIPITSGGTGTNNANDARINLGLGPINAPTFSGMTLQGTNETTSGIAVFSNRNTEGTQLSYSRMYHEIQSGVGKTTIQTTREGGATNYFQIDEYGNIGNINSIIAYGYMGLGAANAMGNASIAIGDSDSGLKWNSDGNISTIADGVKIATWTPHGFYTHKIISSDVANTERGMYVNGVRTTGASALVAGVVEAGSHVGWRDRASGMLVELNTRGAAANIWKATRWGDQHAGASDIVIYDDGSPYYRTLVGGGEFGFNGLGQATCTSWISTSDIRLKAQLKEIVSAKDKVKSLQGYTYFKRNSLVEDEHSFYCEEAGLIAQDVQTVLPEAVYKIANSDLLGVNYSGVTALLANAVKEMLADAEAQEARISNLEEELAELKALVATLVNK
Physico‐chemical
properties
protein length:1071 AA
molecular weight: 113056,67420 Da
isoelectric point:4,75131
aromaticity:0,07470
hydropathy:-0,27918

Domains

Domains [InterPro]
DC_0608
ATT
2–572
DC_0608 DC_1093 IPR030392
Coil
Unmapped
142–162
Coil Coil DC_1942
IPR030392
CHP
954–1014
IPR030392 Coil
YP_011852606.1
1 1071
Architecture
ATT
STR
ATT
ATT 2-572 | STR 605-712 | ATT 713-1071
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011852606.1
1 1071
Domain Start End Length (AA) Confidence
N-terminal 1 477 477 0,8976
Central domain 478 690 214 0,2216
C-terminal 691 1071 380 0,8265
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-477
Central
478-690
C-terminal
691-1071

Taxonomy

  Name Taxonomy ID Lineage
Phage Phage vB_SabS_Sds2
[NCBI] 		2797309 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus Sds2
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011852606.1 [NCBI]
Genbank nucleotide accession
NC_103563.1 [NCBI]
CDS location
range 38145 -> 41360
strand -
CDS
ATGGCACTTAAAACTAAAATTATTGTACAGCAGATTCTGAACATAGATGACACTACAACTACTGCTAGTAAGTATCCTAAGTATACAGTAGTTTTAGGTAATTCTATCAGTTCTATTACTGCTGGTGAACTAACAGCGGCTGTTGAAGCCGCTGCAGAGTCTGCTGCTGCTGCTAAAGATTCTGAAATAGCAGCTAAAGACTCTGAAAATAAAGCTAAAGATTCGGAAATTCAAGCGGGTATTCATGCTGGTGCTTCTGAGGCTTCAGCAACCCAGTCTGCTGCTTCTGCTGCTGAATCTGAAAGACAAGCTAACTTATCTCAAGGTAGTGCGGAAAACTCTGCTGCTTCTGCTTTAGAATCTAAGAATTTTAAAGATGCTTCGGAACTTGCTGCTCAAAATGCAGAGCAGAGTAAGATTTTAGCAGAGCAAGCTCAAAGAGCGGCAGAAGCTGCCCAGTCTGGTGCTCAAGCTTCTGAAAATAAAGCATCAGCATTTGCTACACAAGCTGCTGCATCTTCAGCTTCCGCAGGAGATTTTGCTGCAGCCGCTAAACAATCTGAATTAAATGCTAAAACTTCTGAAACCAATGCCGCAACATCAGAAGTGGAAGCGGAAACCCAAGCTGAAACTGCTACTACTGAGGCAAATCGTGCTAAGGCTGAAGCCGATCGCGCAGCTCAGATTGTAGATAGTAAGTTAGATAAAGAAGATATATCTGGCTTTATCAAAGTCTACAAGACTAAAGAAGAAGCGGACGCCGACGTTAGTAGCCGCGTACTAGGTGAAAAGATCCTAGTGTGGAACCAAACTGACTCAAAATATGGATGGTATAAAGTAGCTGGAACTGCTGAGGCTCCAGTATTAGAGTTAGTAGAGACAGAGCAAAAGCTAGTTTCTATTAATAACGTTCGTGCAGATGACGCAGGTAACGTACAGATTACTCTTCCTGGTGGTAATCCTTCCTTATGGTTGGGTGAAGTTACTTGGTTCCCTTATGACAAAGATTCAGGTGTTGGCTATCCTGGTGTTCTCCCTGCTGATGGCCGCGAAGTCCTTCGTGTAGACTATCCAGATACGTGGGAGGCTATCGAAGCCGGTCTGATTCCTTCTGTTACTGAAGAACAATGGCAAGCTGGTGCAACTCTCTATTTCTCCACTGGTAATGGTACTACTACTTTCCGTCTACCTGATATGATGCAGGGGCAGGCATTCCGTGCTGCTGCAAAAGGCGAGGAAAACGCTGGCAATATTAAAGAGCAAATTCCGTACATTACTATGATTAACGGTAAAGCTCCTGCTGACGATGGTACAATTACTTTAGGTAATGCTGCAGATAAAAACGTATGGAATGGTGTTGATGGTGAGGTATTACTAAGAGGTGCTTTTGGTCTTGGTGGTACTGGTTTAATCCTTAATGAACCTGATGCCGTTTCCTTCTTTAAAGCAATGCGTGCTTTTGGTTCTGGATACTATAGAAATGACTCTGAAAGTAACCCAGTGATTCCTAAGTATTCTGCTGGATTCTACTCCAAAACTGCCGACACTCATACTTTTATCTGTTCTGCTTATGGTAATGGTGTTACTTTCGTAGCTACTATAAATGATGCATTATTAGATGGAGAAAATCCTACTGTACATACAAATATTCTTTATGGTACAGCAAATAAACCTGATCTGAATACCGATACTCAAGGAGTTTTAGGAGTAGAGAAGGGCGGTACTGGTGCTACTACACAGAAAGGTGCTAGACTAAATCTGGATACTCCTGTAGGCAGCAGAGCTATTGGAATGCCTAATAACTCTGATGTACTAGCTTTCATGAAATCTTCCGCAGAAAGCGGATATTATTCCTCTGGTAATATAGTTACTGGAGTTCCAGAAACTGCAGGATGGTATATGTTCGATCTCCATGTACATGGTAAGAATGCTGCGGGAGAAATGGAGTATGGTAATGTATACTGTACAACAAGTGCTGGTGCTATTTGGTACACCTTAATGGAGGTTGGTGTATGGCAGCCATGGAGACGTTTGACCACAGAACATGGTATTATTCCTATTACTTCAGGGGGTACTGGTACAAATAATGCAAATGACGCAAGAATAAATCTAGGTCTTGGTCCTATAAATGCACCTACTTTTAGTGGTATGACTCTTCAGGGTACTAATGAAACTACTTCAGGTATAGCGGTTTTTAGTAATAGAAATACGGAAGGGACTCAACTTTCCTATTCTAGAATGTACCATGAAATTCAGAGTGGTGTTGGTAAAACTACTATTCAGACTACAAGAGAGGGCGGGGCGACTAACTATTTCCAAATTGATGAGTATGGTAATATTGGGAATATTAACTCAATTATTGCATATGGATATATGGGATTAGGTGCTGCTAATGCTATGGGAAATGCCTCTATTGCGATTGGTGACTCTGACTCTGGGCTAAAATGGAATAGTGATGGTAACATAAGTACCATAGCAGATGGTGTAAAAATAGCCACATGGACACCTCATGGATTTTATACACATAAAATAATAAGCTCAGATGTTGCTAATACCGAAAGAGGGATGTATGTAAACGGGGTTAGGACTACCGGTGCCTCCGCTCTTGTAGCTGGGGTTGTAGAAGCTGGATCTCATGTTGGTTGGAGAGATAGAGCTTCAGGTATGCTTGTTGAATTGAATACTAGAGGAGCTGCTGCCAATATCTGGAAAGCAACTAGATGGGGTGATCAACATGCTGGTGCATCTGACATCGTTATTTATGATGATGGATCTCCTTATTATAGAACTCTTGTAGGCGGTGGTGAATTTGGGTTCAATGGCCTTGGACAAGCTACCTGTACTTCTTGGATTAGTACATCTGATATTAGGCTTAAGGCACAGCTAAAAGAGATAGTATCTGCTAAAGATAAGGTAAAATCCCTACAGGGGTACACTTATTTTAAACGTAATAGTTTGGTTGAAGATGAGCATTCTTTTTATTGTGAAGAGGCAGGATTAATCGCACAGGATGTTCAAACTGTACTACCGGAAGCTGTATATAAAATAGCTAACTCAGATCTTCTCGGTGTTAATTACTCTGGTGTTACCGCATTATTGGCTAACGCAGTAAAAGAGATGTTGGCGGATGCGGAGGCTCAGGAAGCTCGTATCAGTAATCTAGAGGAAGAACTGGCAGAGTTAAAAGCTCTAGTAGCCACTCTGGTAAATAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1d366ecc9000007c6b584d5c877984b8ebdb370b94e099de859f4bf1fa346046
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6080
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome analysis of a novel phage vB_SabS_Sds2 Song,P., Ren,H., Liu,W., Zhang,C. and Zou,L. 2019-02-14 — GenBank