Protein

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Genbank accession
YP_009042546.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MRLFLDFPVELGQEFRYKTVENFKRIVNAHGRLVDDLEYHRKEEKHAHDAKQIDYTTSYSRSVSDALDKQNNRINNLVVGANGDAMAEVKDSRVALDGTISELLSQRLDYDFGKLNKKIDDNFKYLNDKIERIVNVNDYGADPTGQKDSTLAFQKAFGEGHRHVHMTEGTYIISGVKMPNYTILSGEGKGITYLRIADDAPAETIGITNLNMDGTAEYIGVDNFTIDGNRTRQGNTLSPAGGSRSSNIRFAGVKHGFAYSVESFSSLLHGIDVTYASDDYFYQGDGIRVKEALESKYIHIQECETYDFGDDGITTHHSRYLILQNNYSHDPVKDSGNHNGIEVDDGSQHVFVMGNKTEKCFGGLEIKAHEPTSAASDVVVSDHLDIKSIRSYNIRHIGHHRAGDVQSKTAYNIMLNNCTSLYPQYNGSYENTTPRAMVICAYRNVVVNNFTAIGDGNFMANMPVIAVQFRAENVMLNNINVSGFKNSLADVKVFGGANRPKKVSLSNINIVNSSNNRGIAGGGKIYDLRIINANLQGNGTGNGVELYNNTAEIVGVSAENYKRPAMIAGKEYFYMPTSLKGGFSGGSTGGAAIAERSAVIASTGGSFAHSNRSFVIGSGAGSIANGSRSGVISSLSSVIEPGGHTRMIINSKNMKNSENYHIKAGYGADGPPSESNTKLDISTFTGTIKTAGQVQSGQNFGDYAEYFESQSGMAIPTGNIVTLDGRFIRKAQVNDIPIGVISETAGVILGDQMFHHKDKYLKNEFGGVITENVKKEWQDDAGNWYSDTVEMPVKNPDFDERDEEEYLSRAERPEWNVVGLIGQVYIRIDGTVKENDYIKPVNGVGTKDNINGYYRVEQITTPYDNDKGYGVAIAFIHPITPSIINKGSVK
Physico‐chemical
properties
protein length:890 AA
molecular weight: 97586,37530 Da
isoelectric point:5,87968
aromaticity:0,08876
hydropathy:-0,46461

Domains

Domains [InterPro]
DC_0125
ATT
1–209
DC_0125 DC_0616 IPR021865
IPR012334
STR
117–577
IPR012334 G3DSA:2.160.10.20 G3DSA:2.40.300.10
IPR011050
STR
131–515
IPR011050 G3DSA:4.10.80.40
IPR024535
ENZ
133–364
IPR024535
YP_009042546.1
1 890
Architecture
ATT
STR
RBD
ATT 1-209 | STR 210-646 | RBD 647-876 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009042546.1
1 890
Domain Start End Length (AA) Confidence
N-terminal 1 148 148 0,9935
Central domain 149 656 509 0,9863
C-terminal 657 890 233 0,9094
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-148
Central
149-656
C-terminal
657-890

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage 6ec
[NCBI] 		1500386 Uroviricota > Caudoviricetes > Sextaecvirus >
Host Homo sapiens
[NCBI] 		9606 Chordata > Mammalia > Primates > Hominidae > Homo >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009042546.1 [NCBI]
Genbank nucleotide accession
NC_024355 [NCBI]
CDS location
range 31666 -> 34338
strand +
CDS
TTGAGATTGTTTTTAGATTTCCCTGTTGAATTAGGGCAAGAGTTTAGATATAAAACAGTAGAAAATTTCAAAAGAATCGTTAATGCTCATGGGCGTTTAGTTGATGATTTAGAATACCATAGAAAAGAAGAAAAGCACGCACATGATGCTAAACAAATTGATTACACAACAAGTTATTCAAGAAGTGTTAGTGACGCATTAGATAAACAGAACAATAGAATCAATAATCTAGTAGTCGGTGCAAATGGAGATGCTATGGCAGAGGTTAAAGATAGCCGAGTTGCATTAGACGGAACAATAAGTGAATTACTTTCACAAAGACTAGATTATGATTTTGGTAAATTGAATAAAAAAATTGATGATAATTTTAAGTATCTTAACGACAAAATTGAACGTATTGTTAATGTTAACGATTATGGTGCTGACCCTACAGGTCAAAAAGATTCAACATTAGCATTCCAAAAAGCATTTGGAGAAGGTCATAGACATGTTCATATGACAGAAGGTACTTATATTATATCTGGTGTTAAAATGCCTAACTATACGATTTTAAGTGGGGAAGGTAAAGGAATAACATATTTAAGGATTGCAGATGATGCGCCAGCTGAAACAATTGGTATAACTAACTTAAATATGGATGGAACAGCTGAATATATTGGTGTTGATAATTTCACAATTGACGGAAATAGAACAAGACAAGGGAATACGTTATCTCCAGCTGGTGGTTCACGTTCAAGCAACATTAGATTTGCTGGTGTTAAGCATGGTTTTGCATATTCTGTAGAATCATTTAGCAGTTTATTACATGGTATTGATGTAACGTACGCTAGTGATGATTATTTCTATCAAGGAGACGGAATCAGAGTAAAAGAAGCATTAGAAAGTAAATATATTCATATACAAGAATGTGAAACTTATGATTTCGGAGACGATGGTATTACTACTCATCATAGTAGATACTTAATTCTGCAAAATAACTATTCACACGACCCAGTAAAAGATAGTGGGAACCATAACGGGATTGAAGTGGACGATGGTTCACAACATGTGTTTGTAATGGGGAATAAAACAGAAAAATGTTTTGGTGGTTTAGAGATTAAAGCGCATGAACCTACAAGCGCAGCAAGTGATGTTGTTGTAAGTGACCATCTTGATATTAAAAGTATTCGTTCTTATAATATTCGTCATATAGGACATCATAGAGCCGGAGATGTACAATCTAAAACAGCCTATAATATTATGTTGAATAACTGTACTTCATTATATCCTCAATATAATGGTTCATATGAGAATACAACACCAAGAGCAATGGTTATTTGTGCTTACAGAAATGTGGTTGTTAATAACTTTACAGCTATTGGCGATGGCAATTTTATGGCAAATATGCCAGTTATCGCTGTCCAATTCAGAGCAGAAAACGTTATGCTTAACAATATTAATGTAAGTGGTTTTAAAAATTCATTAGCTGACGTTAAAGTATTTGGTGGAGCAAATAGACCTAAAAAAGTATCATTATCTAATATCAATATTGTTAATTCATCTAACAATAGAGGTATTGCAGGCGGTGGAAAAATTTATGATTTAAGAATTATAAATGCTAACTTGCAAGGTAATGGCACAGGAAATGGCGTTGAATTATATAATAACACAGCTGAAATTGTTGGAGTAAGTGCTGAGAATTATAAAAGACCAGCAATGATTGCGGGTAAAGAATATTTCTATATGCCCACAAGTCTTAAAGGAGGATTCAGTGGGGGGAGCACAGGTGGTGCAGCTATTGCTGAAAGAAGTGCTGTTATTGCCTCTACTGGTGGTTCCTTTGCTCATAGTAACCGTTCTTTTGTTATAGGCTCTGGTGCTGGTAGTATTGCTAATGGTTCACGTTCTGGTGTTATTAGTTCATTGTCATCTGTTATTGAGCCAGGCGGACATACTAGAATGATTATTAATAGTAAAAACATGAAAAACAGTGAAAACTATCACATTAAAGCTGGTTATGGAGCTGACGGTCCACCAAGTGAATCAAATACTAAACTTGATATTAGTACATTTACTGGTACAATCAAGACAGCAGGACAAGTTCAATCTGGACAAAACTTTGGGGACTATGCCGAGTATTTTGAATCACAAAGTGGTATGGCAATTCCTACTGGTAATATAGTTACACTTGATGGTAGATTTATAAGAAAAGCACAAGTCAATGATATTCCAATCGGTGTTATATCTGAGACAGCAGGAGTTATTTTAGGGGACCAAATGTTCCACCATAAAGACAAATATCTTAAAAATGAATTTGGCGGAGTTATTACTGAAAATGTCAAAAAAGAATGGCAAGATGATGCTGGTAATTGGTATTCAGATACAGTAGAAATGCCAGTTAAAAATCCAGATTTTGACGAACGAGACGAAGAAGAATATCTGTCTCGTGCTGAACGACCAGAATGGAACGTTGTAGGTCTTATAGGTCAAGTATATATTAGAATAGATGGTACTGTCAAAGAAAATGATTATATTAAGCCAGTAAACGGTGTCGGAACTAAAGATAATATTAATGGTTATTATAGAGTTGAACAAATTACTACCCCATATGATAACGATAAAGGTTATGGTGTGGCAATTGCATTTATCCACCCTATTACACCAAGCATAATTAATAAAGGAAGTGTTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a6380d85764c85da9e1c34b05c82e30c37d157fd907e90c5a7bf6d504b865abf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7654
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50