Protein

View in Explore
Genbank accession
AMQ65897.1 [GenBank]
Protein name
VlrC protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPLEIANTILSASPYFDDYNENKNFHRVLFRPAVAVQARELTQLQSILQNQIERFGNHIFKDGSVVQGCSVEYIPDLEYIGVEDQFTDDTDLSVADEQLLGAVVVGQTSDVQALVIATRSGFIRQKPGRLYVRYTKPGINNQRSFLPGEELRLYGENTTYVENIILDVDNASDFANAVSLTVDAVQTGNTANVLARAILANVDVANSKLLVNNVRRRFTANTTLVVSANPSQTTTITGVNYELSNEIGRINTLTSNTDGVAIANTDLSGFSYGAHVSDGIVYHKGFFIRVGNHNVIVNEDSNNPAGYLLGFDTTEQVITETSDDSLYDNALGYNNYNAPGAHRLKLTSNVVSRAANTLSNTDIFFPIVEFSNTGVAFERTDPEYAALGDSIAQRTYEESGHYIVKPFGVSSNTDPADAGSLIFDLSPGLAYVKGFRTELLTNLPVKSRRGTNTVSYSEQIVSMSFGNYAIVNDVRGYFPTDSGAVVSLYDAPQDAVGTIKSPTSAPSGNLIGQANIRELIQTAGVTGDANTEQYRMYLFNVQMSNSSLSFARDVKGIVYNPNTTARAFADIAVANVGLQESSYTPLIFSLGAKAVKTLKDGANVADSNFYYNAANTSASMDAAGAINFRVPSGGGILGFTDGSDFSEAKVDIVLRTEAVSANLTAAAVLVTNASGNFVNFTGAAGRLLPGEGVRHGANTYLVIGSNGADSIKVANTVVANTAQGVARVHYAGSHVSLSGTGRTMTINANNEATINLGSAYTNAPVDARLRFYTLQNQGAEVKKEVRRSTVVLATVANSAPNGPWNLGLPDVFELTGVYLAANTGANTTADLSINYVNQFQLDDGQRDAFYDHASVSLAPGFSSAQFVGQTLLFTVDHFVANNTTGKGFFSVDSYPINDAGSANTAATIKTAEIPSYFSSAQQRTFDLRDSLDFRPYKAATATITSNLRVASLNPATTQSFDSQTTTFKPYPGQNFECNFTHYLGRKDVLTLTPAGEFVVVEGVASLTPRTPQYPSESLALANIEVPPYPSLPDNEQKEFGRPDYSIKISVQNHKRFTMKDISAIEQRVSRLEYYTSLNALEKAATDLKITGSSGLDRFKNGIFVDPMNNHSFGRVDVPQYKVSIDENKGFARPFFQPEFFELDFDQANSPGCRKAGDMITMDYDEQEFLSQGYATDSRKLSGAPPSYTGTLLLTPNRWTEVEVLAKPVSVNATDKASLAYREMEAPALCSQYGWWRTNKLATVIDGILADDGTAVETLRDKTSLGTENNYSLDDNTSASITIQPYIRARELAFRAYGLKPYTVYYVYVDDIESNDLVAPGDIIDEDATDETVVKRAQMWGSPIESNSRGEVAGKITIPGFRFKVGRHTIKLMSHRVDAVTNEQVSTAAALFEVDVVYKEAPPPIVVIINPEPPAPPTPPAPPPTPAPPPSPPPAPTPPTARFNTGGDAYATAPANHVIPFYDASTPGSGTITTWAWDFGDGTFYSGQNPPAHTYVVNDSAQAFYPRLVITDSNGLQSEYKGAFTLYKLQPAPPPPPPPPPAPSASIYISSYTGAAVDNFSFTNGALVGSGYCQAAGRVSSYHYATPSTTYAGAFFDWTVVVNSGTALTNVVENGNRVDLVLNDPTPSTTPLTSSMSIKVDYKYSNGYIIGSTTIPFTMATTNVVSGGGGRGGGGGGCVVSDSYLTNDKKAYDVRVGDYVDGYTAITDECKPMMVTERAAPMFRDSVRMVTESGATLRCSKDTPFTIRGSYSDSYELSKKAPEMLGEEVLVDRDGVKSWEKVVRIDEIGNAEVIRLNISDRSFAAGDLPNVRIYSHNASISYEKM
Physico‐chemical
properties
protein length:1824 AA
molecular weight: 196758,46680 Da
isoelectric point:4,93194
aromaticity:0,09539
hydropathy:-0,23465

Domains

Domains [InterPro]
IPR032096
STR
14–71
IPR032096 DC_0221 IPR032096 IPR032096 DC_0082 IPR013783 G3DSA:2.170.16.10
DC_0414
STR
159–1214
DC_0414 IPR051412
IPR035986
STR
1436–1518
IPR035986
IPR000601
ENZ
1456–1517
IPR000601
cd00146
ENZ
1461–1514
cd00146
IPR000601
ENZ
1467–1494
IPR000601
AMQ65897.1
1 1824
Architecture
STR
ATT
STR
RBD
STR
RBD
STR 14-71 | ATT 77-179 | STR 180-1214 | RBD 1215-1407 | STR 1435-1525 | RBD 1674-1816 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMQ65897.1
1 1824
Domain Start End Length (AA) Confidence
N-terminal 1 553 553 0,8012
Central domain 554 815 263 0,7168
C-terminal 816 1824 1008 0,1163
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-553
Central
554-815
C-terminal
816-1824

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage vB_SmaS-DLP_6
[NCBI] 		1651816 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMQ65897.1 [NCBI]
Genbank nucleotide accession
KU682439 [NCBI]
CDS location
range 157096 -> 162570
strand +
CDS
ATGCCTCTCGAGATCGCCAACACAATCCTCAGCGCGTCGCCTTACTTCGACGACTACAACGAGAACAAGAACTTCCACCGAGTTCTGTTCCGTCCTGCAGTCGCAGTTCAGGCGCGCGAGCTGACGCAATTGCAGTCGATCCTGCAGAATCAGATTGAGCGTTTCGGCAACCACATCTTCAAGGATGGTTCGGTTGTCCAAGGCTGCTCGGTCGAATACATCCCAGACCTTGAGTACATCGGCGTTGAAGATCAGTTCACCGATGACACCGACCTGTCTGTTGCTGACGAACAGCTGCTTGGTGCAGTTGTTGTCGGTCAGACGTCTGACGTGCAGGCGCTTGTCATCGCTACGCGCTCTGGCTTCATTCGCCAGAAGCCGGGTCGCCTCTACGTTCGCTACACCAAGCCAGGCATCAACAACCAGCGTTCGTTCCTTCCGGGCGAAGAGCTGCGTCTGTATGGTGAGAACACCACATACGTCGAGAACATCATCCTCGACGTCGACAACGCATCAGACTTCGCAAACGCAGTCTCGCTGACCGTTGATGCCGTACAGACTGGCAACACTGCCAATGTTCTGGCACGCGCTATCCTCGCGAACGTTGACGTTGCGAACAGCAAGCTGCTGGTGAACAACGTTCGCCGCCGCTTCACCGCGAACACCACGCTCGTTGTCTCGGCAAACCCTTCTCAGACCACCACGATCACGGGCGTCAACTACGAGTTGTCGAACGAGATCGGTCGCATCAACACGCTGACCTCCAACACTGACGGCGTGGCGATTGCCAACACCGATCTGTCGGGCTTCAGCTACGGCGCACACGTCTCTGACGGTATCGTGTACCACAAGGGCTTCTTCATCCGCGTTGGCAACCACAACGTCATCGTCAATGAAGACAGCAACAACCCGGCAGGCTACCTGCTTGGTTTCGACACCACCGAGCAAGTCATCACCGAGACCAGCGACGACTCGCTGTACGACAACGCGCTCGGTTACAACAACTACAACGCTCCGGGCGCACACCGCCTGAAGCTCACATCGAACGTTGTGTCGCGTGCTGCGAACACTCTGTCGAACACTGACATCTTCTTCCCGATCGTTGAGTTCAGCAACACTGGTGTTGCGTTCGAGCGTACCGATCCAGAGTATGCAGCGCTCGGCGACTCGATCGCACAGCGTACCTACGAAGAGAGCGGACACTACATCGTCAAGCCGTTCGGCGTATCCTCGAACACAGATCCTGCAGATGCAGGAAGCCTGATCTTCGACCTGTCGCCGGGTCTGGCTTACGTCAAGGGCTTCCGCACCGAGTTGTTGACCAATCTCCCGGTCAAGAGCCGCCGTGGTACCAACACAGTCTCGTACAGCGAGCAGATCGTCTCGATGTCGTTCGGCAACTACGCAATCGTCAATGACGTGCGCGGTTACTTCCCGACCGACAGCGGCGCTGTTGTCAGCCTGTACGATGCTCCGCAGGATGCAGTCGGCACCATCAAGTCTCCGACCTCGGCTCCGAGCGGCAACCTGATCGGTCAGGCAAACATCCGCGAGCTGATTCAGACCGCAGGCGTAACCGGTGACGCGAACACCGAACAGTACCGCATGTACCTGTTCAACGTGCAGATGAGCAACAGCTCGCTGTCGTTTGCTCGCGACGTCAAGGGTATCGTCTACAACCCGAACACCACCGCACGCGCATTTGCTGACATCGCAGTCGCGAACGTTGGTCTGCAGGAATCCAGCTACACCCCACTCATCTTCTCGCTTGGTGCCAAGGCTGTCAAGACGCTGAAGGATGGTGCGAACGTTGCTGACTCCAACTTCTACTACAACGCAGCAAACACCAGCGCGTCCATGGATGCGGCGGGTGCGATCAACTTCCGCGTTCCTTCGGGCGGCGGTATCCTCGGCTTCACCGACGGTTCCGACTTCTCTGAGGCAAAGGTTGACATCGTGTTGCGTACAGAGGCTGTCTCCGCGAACCTCACAGCAGCTGCTGTGCTGGTCACCAACGCGAGCGGCAACTTCGTCAACTTCACTGGCGCTGCAGGTCGACTGCTGCCGGGCGAGGGCGTGCGCCATGGTGCGAACACTTACCTCGTAATCGGCTCGAACGGCGCAGACTCCATCAAGGTCGCAAACACCGTTGTCGCAAACACTGCACAGGGCGTTGCTCGCGTTCACTACGCTGGCTCGCACGTAAGCCTGAGCGGCACTGGTCGTACGATGACCATCAACGCGAACAACGAAGCAACCATCAACCTTGGCTCGGCGTACACCAACGCGCCAGTTGATGCACGCCTGCGCTTCTACACTCTGCAGAATCAGGGTGCTGAAGTCAAGAAGGAAGTCCGTCGCTCGACGGTCGTCCTGGCAACCGTTGCGAACAGCGCGCCGAATGGTCCGTGGAACCTTGGTCTGCCGGACGTCTTTGAACTGACCGGCGTCTACCTCGCTGCCAACACTGGCGCGAACACGACTGCTGACCTCAGCATCAACTACGTCAATCAGTTCCAGCTTGATGACGGTCAGCGTGATGCGTTCTACGACCACGCTTCTGTATCGCTGGCACCGGGCTTCAGCTCGGCGCAGTTTGTTGGTCAGACCCTGCTGTTCACTGTCGATCACTTCGTCGCGAACAACACGACTGGTAAGGGCTTCTTCAGCGTTGACTCCTATCCGATCAACGACGCTGGCAGCGCAAACACCGCAGCGACCATCAAGACCGCAGAGATCCCGAGCTACTTCAGCTCAGCTCAGCAGCGCACGTTCGATCTGCGTGACAGCCTCGACTTCCGCCCGTACAAGGCGGCTACGGCTACTATCACCAGCAACCTGCGCGTCGCATCGCTGAACCCGGCTACGACTCAGAGCTTCGATTCGCAGACCACCACGTTCAAGCCATATCCTGGTCAGAACTTCGAGTGCAACTTCACCCACTACCTGGGTCGTAAGGATGTGCTCACTCTGACTCCGGCTGGCGAGTTCGTTGTCGTGGAAGGCGTCGCATCGCTGACGCCGCGTACACCGCAGTACCCGAGCGAATCGCTGGCACTGGCTAACATTGAAGTGCCGCCGTACCCATCTCTGCCAGATAACGAGCAGAAGGAGTTCGGTCGCCCGGATTACTCGATCAAGATCAGTGTCCAGAACCACAAGCGTTTCACGATGAAGGACATCTCTGCCATTGAGCAGCGTGTCTCGCGTCTGGAATACTACACCAGCCTCAACGCGCTGGAGAAGGCGGCTACGGATCTCAAGATCACTGGTTCCTCGGGTCTGGATCGCTTCAAGAACGGTATCTTCGTCGATCCGATGAACAACCACAGCTTCGGTCGTGTAGACGTGCCGCAGTACAAGGTGTCCATCGACGAGAACAAGGGCTTCGCTCGCCCGTTCTTCCAGCCAGAGTTCTTTGAGCTTGACTTCGATCAGGCTAACTCGCCGGGTTGCCGCAAGGCTGGTGACATGATCACCATGGACTACGACGAGCAGGAATTCCTCTCGCAGGGCTACGCAACGGACAGCCGTAAGCTGTCGGGTGCACCGCCGTCCTACACTGGTACGCTGCTGCTGACTCCGAACCGTTGGACCGAGGTTGAAGTCCTCGCGAAGCCGGTCAGCGTCAACGCGACCGACAAGGCTTCTCTCGCATACCGCGAGATGGAAGCACCGGCACTGTGCAGCCAGTATGGCTGGTGGCGCACCAACAAGCTGGCAACTGTCATCGATGGCATCCTTGCCGATGACGGTACGGCTGTTGAGACGCTGCGTGACAAGACAAGCCTCGGCACCGAGAACAACTACAGCCTGGATGACAACACCAGCGCATCGATCACGATCCAGCCGTACATCCGTGCGCGCGAGCTCGCGTTCCGCGCTTACGGTCTGAAGCCGTACACCGTCTACTACGTCTACGTGGATGACATCGAGTCGAATGACCTCGTTGCTCCGGGTGACATCATTGACGAGGACGCTACCGACGAAACAGTTGTCAAGCGTGCTCAGATGTGGGGTTCGCCAATCGAGTCCAACTCGCGTGGTGAAGTCGCAGGCAAGATCACGATCCCAGGCTTCCGCTTCAAGGTTGGTCGTCACACGATCAAGCTCATGTCGCACCGCGTTGACGCAGTGACCAACGAGCAAGTCAGCACTGCTGCTGCTCTGTTCGAGGTCGATGTCGTCTACAAGGAAGCGCCGCCACCAATCGTCGTCATCATCAACCCGGAACCACCGGCACCGCCGACTCCACCGGCACCACCGCCAACTCCAGCACCACCGCCAAGCCCGCCACCGGCACCAACCCCGCCGACGGCACGCTTCAACACTGGCGGCGATGCATACGCGACGGCTCCGGCAAACCACGTCATTCCGTTCTACGACGCTTCGACGCCGGGTTCGGGAACCATCACGACATGGGCATGGGACTTCGGTGACGGTACGTTCTACAGCGGTCAGAATCCTCCGGCTCACACCTACGTGGTGAACGATTCGGCTCAGGCATTCTACCCGCGTCTGGTCATCACTGACAGCAACGGTCTGCAGAGCGAGTACAAGGGTGCGTTCACTCTGTACAAGCTCCAGCCGGCTCCGCCGCCACCACCGCCACCACCGCCAGCTCCGAGCGCATCGATCTACATCTCGAGCTACACGGGTGCTGCTGTTGACAACTTCAGCTTCACCAACGGTGCTCTGGTAGGTTCTGGCTACTGCCAGGCTGCAGGTCGCGTGTCGTCGTACCACTACGCTACGCCGTCCACGACGTATGCTGGTGCGTTCTTCGACTGGACTGTTGTGGTCAACTCCGGTACGGCGCTGACCAATGTTGTAGAGAACGGAAACCGTGTCGACCTCGTGCTGAACGACCCGACGCCTTCCACCACTCCGTTGACGTCTTCGATGTCGATCAAGGTCGATTACAAGTACAGCAACGGTTACATCATCGGTTCCACGACCATCCCATTCACCATGGCAACGACCAACGTCGTTTCCGGTGGCGGCGGTCGAGGCGGCGGTGGCGGTGGTTGCGTTGTCTCGGACAGCTACCTAACTAATGACAAGAAGGCATACGACGTCCGCGTTGGCGATTACGTTGATGGCTACACCGCTATCACCGATGAATGCAAGCCAATGATGGTCACCGAGCGTGCTGCTCCGATGTTCCGTGACTCCGTACGCATGGTCACTGAATCCGGCGCAACCCTCCGTTGCTCGAAGGATACACCGTTCACCATCCGTGGTTCCTACTCCGACTCTTACGAGCTGTCGAAGAAGGCTCCGGAAATGCTCGGTGAGGAAGTACTGGTTGACCGCGATGGTGTCAAGTCGTGGGAGAAGGTGGTTCGTATCGATGAGATCGGTAACGCCGAAGTCATCCGTCTGAACATCAGCGACCGTTCCTTCGCAGCAGGTGATCTGCCTAACGTCCGTATCTACAGCCACAACGCGTCTATCAGCTACGAGAAAATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c601a73d275aa97ff840e35c9e5fb77177245370d20d86fe7a70d327ef251165
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7433
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of chimeric Stenotrophomonas maltophilia phage DLP6 Peters,D.L. and Dennis,J. 2017-03-14 — GenBank