Protein

View in Explore
Genbank accession
XVB93775.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MSDFKTLSFDPRGDNTENLLTELVVLDDATLDYIKPDYTPFYSSTVVITDKDGQVRNEGTDYVLEGLVVPLVKTSGKDVKAYIRIINTELYAKSPLSIRYHSCGINHFPKSMVNNTSTGSEGNSLPIDWNTQVLGKPDSYPFKPHIHNVETEIAAWTDLADEIEEIYQYRKNHILAKYQELKGLSDAVWVATDLTAKQLRDKVMNHDRDLANPHDVDAADVLLGNVDNFATATANDELLGLADKFSTPLGAQSILNSSLQTTDSYHHIGRLPLSYYGTDFYIPPPIEGDFKGMWTNCESAGFCLEDNGTLMMLANASDGKHNGLFYTTIENWDSPNPKLRYTGYPYQWGNLDYRKLNTIVEGSGKDVMIVGNRASQDWYITLTKGTFDPAKHNLHKISFDTTPPGMWDNYAVNETFPWFDISKVFVAGNYVWLMYLNHQNFSGELRIAKDLYFYRIPLSAFDTDGPLVFQAVTLTSAQNVFGTTFTNVKPLRITDPVKKSSGWYNNSWCRTSLDLVASYQWIKSVIIPADYDSASNKKLIYLETRMHNYYYNGSVYSFYAPALQFIYIFDPDNNTFLLHPDSGRNYLIDLVTTSNNPQRVEGRMGNGDYWVNVGRNNRPSIMHLNGHILKSEINQTYTTFKLNVDLLSWFKDPYSGTTGRSNALTCVKKSYPMVEPPGAVQSSYFDGGEIYGVYGPNPSSPTNAATKMGLYLRTGLGDYANHPEMRWDNTNLMIRLPSNQDFKIAGGGNYARCSVTGDAAALTAAGTTIGWTGFSVYEDRGVFDKFTNWPAQPSNQVALPGNITWDTSVPGVATAQVNSTVNYPTTVINQIKAVLTNGIGATKYSSFTLYDFTYSPFADVYSVATLFYTKPGSAGLWTRFILFKPTVTTSGTVKTVTGYSVLYNSGESVNDGQRFFANIDMSYFRGKDTYPIVEVYVNRTTGTHYYNIYPGVCFNPLGSTTAYAASYIVQPRIQLQRATSNNAITVTENTTRPTWYADDCYLTVVPKVGRVTVYGIDVLTEMANTGSITTVNGTRYVTAHTYPADNWYVYFTNAINVTIEGGSYLMPTGSISLYDIVSNPVDKTFYVYIRLNGTKAEYFVTTKKLYVSSKMLFVATITTNDKGISNIDLLQPMMVGDLVLSNVRRGQAIPVVDGSLGQEATVVWKRSQDN
Physico‐chemical
properties
protein length:1170 AA
molecular weight: 130638,10730 Da
isoelectric point:5,67614
aromaticity:0,12564
hydropathy:-0,28761

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XVB93775.1
1 1170
Domain Start End Length (AA) Confidence
N-terminal 1 264 264 0,9915
Central domain 265 463 200 0,9203
C-terminal 464 1170 706 0,4245
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-264
Central
265-463
C-terminal
464-1170

Taxonomy

  Name Taxonomy ID Lineage
Phage Raoultella phage VB_ZK_P1
[NCBI] 		3425683 Viruses > unclassified bacterial viruses >
Host Raoultella ornithinolytica
[NCBI] 		54291 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XVB93775.1 [NCBI]
Genbank nucleotide accession
PV662128 [NCBI]
CDS location
range 108088 -> 111600
strand +
CDS
ATGTCTGACTTTAAAACCCTATCCTTTGATCCCAGAGGGGATAACACTGAAAATCTGTTAACCGAATTAGTGGTGTTAGACGATGCCACTCTCGATTACATTAAACCGGATTATACCCCTTTTTATTCCAGCACTGTAGTTATCACTGACAAAGACGGTCAAGTAAGAAATGAGGGCACCGACTATGTTCTTGAAGGTTTGGTCGTTCCCCTCGTAAAGACTTCTGGGAAGGATGTAAAGGCCTACATCAGAATTATCAACACAGAACTCTACGCTAAGTCGCCTCTGAGCATTCGGTATCACTCCTGTGGGATTAACCATTTCCCTAAAAGCATGGTTAATAACACCTCTACTGGTTCAGAAGGCAACAGCCTCCCCATCGATTGGAATACACAAGTTTTAGGTAAGCCGGATTCTTACCCTTTTAAGCCGCATATTCATAACGTCGAAACTGAAATAGCGGCATGGACTGATTTAGCCGATGAAATAGAAGAGATTTATCAATACAGAAAAAATCACATCCTTGCCAAATATCAGGAATTAAAAGGGTTAAGCGATGCGGTTTGGGTGGCGACTGATCTCACGGCCAAACAGCTCCGTGATAAGGTGATGAATCACGATCGTGATCTTGCTAACCCTCATGATGTTGATGCAGCTGACGTTTTACTTGGTAACGTAGACAACTTCGCTACGGCTACTGCTAATGACGAATTATTGGGATTAGCCGACAAGTTCTCAACCCCACTGGGGGCGCAGTCCATACTTAATAGTTCGTTGCAAACCACAGACAGCTATCACCACATTGGCCGGCTCCCTCTTTCTTATTACGGAACTGATTTTTATATTCCTCCTCCGATAGAAGGGGACTTCAAAGGGATGTGGACGAACTGTGAATCGGCCGGATTCTGTTTGGAAGATAACGGGACGTTGATGATGCTCGCCAATGCATCCGACGGAAAGCACAACGGCTTGTTTTACACCACTATTGAAAATTGGGACAGTCCTAATCCAAAACTCAGATATACCGGTTATCCTTACCAATGGGGAAATTTGGATTACCGTAAACTCAACACCATTGTTGAGGGTTCCGGTAAAGACGTGATGATCGTAGGGAACCGGGCATCTCAGGATTGGTATATTACCCTGACCAAAGGGACCTTCGATCCAGCGAAACACAATCTGCACAAAATCTCTTTTGACACCACCCCTCCTGGGATGTGGGATAATTACGCCGTTAACGAAACATTCCCCTGGTTTGATATCAGCAAGGTTTTTGTCGCAGGAAACTATGTCTGGTTGATGTATCTTAATCATCAGAATTTTAGCGGTGAGTTAAGAATAGCGAAAGATCTTTATTTCTACCGCATCCCTTTATCAGCCTTTGATACCGACGGCCCACTGGTATTCCAAGCCGTTACCTTGACGAGCGCGCAGAACGTTTTCGGTACGACGTTTACTAATGTTAAACCACTTCGTATCACCGATCCCGTTAAGAAAAGTTCAGGGTGGTATAACAACAGTTGGTGTCGAACTTCCCTGGATCTCGTCGCGTCTTATCAGTGGATAAAATCAGTAATTATCCCTGCCGATTACGATTCGGCATCTAACAAGAAGCTGATCTATTTAGAAACCAGGATGCATAACTATTATTATAATGGTTCGGTTTATAGTTTCTACGCTCCGGCTCTTCAATTTATTTACATCTTTGACCCGGATAACAATACTTTCTTACTACATCCAGATAGTGGGAGGAACTACCTCATTGACCTGGTAACAACCTCCAATAACCCGCAGAGGGTAGAAGGAAGGATGGGAAACGGCGACTATTGGGTCAACGTCGGTAGGAACAACAGACCGAGCATAATGCATCTCAACGGCCACATTCTAAAATCGGAAATAAATCAGACTTACACCACGTTCAAACTTAACGTCGATTTACTCAGCTGGTTCAAGGATCCTTATTCCGGAACAACGGGTAGGTCAAACGCTCTGACGTGTGTTAAAAAGTCTTATCCGATGGTAGAACCTCCTGGAGCGGTTCAATCAAGCTATTTCGATGGGGGCGAAATATATGGGGTTTATGGCCCTAACCCATCCAGCCCTACCAACGCAGCGACCAAAATGGGGTTATATCTCAGAACCGGATTGGGTGACTACGCCAATCACCCTGAAATGAGATGGGACAATACTAATCTCATGATACGCCTTCCTAGTAACCAGGATTTCAAAATTGCGGGTGGTGGGAACTACGCGAGATGTAGTGTAACCGGTGACGCGGCCGCTTTAACTGCTGCCGGCACCACAATAGGGTGGACTGGATTTAGCGTTTATGAGGACAGGGGTGTTTTCGATAAATTCACCAACTGGCCCGCTCAGCCCAGTAATCAGGTTGCTTTACCCGGGAATATCACCTGGGATACCAGCGTTCCTGGGGTCGCGACAGCCCAGGTGAATTCTACAGTAAATTACCCAACCACCGTTATCAACCAGATTAAAGCGGTGTTGACGAATGGCATCGGAGCGACGAAATATTCGTCATTCACACTCTACGACTTTACCTATTCCCCATTTGCGGACGTCTATTCGGTCGCCACACTGTTCTATACAAAGCCGGGGTCCGCTGGCTTGTGGACAAGGTTTATTTTGTTTAAACCTACAGTGACAACATCCGGTACCGTAAAAACTGTGACGGGTTATTCGGTTCTGTACAATTCCGGTGAGTCCGTCAACGACGGACAGAGATTCTTCGCGAACATAGACATGAGTTATTTTAGGGGGAAAGACACTTATCCCATAGTAGAAGTCTATGTCAATCGAACCACCGGGACCCATTATTACAACATTTATCCGGGTGTTTGTTTTAATCCGTTAGGAAGCACGACGGCGTATGCGGCTTCTTATATCGTACAGCCTCGTATACAGTTGCAGCGAGCGACATCCAATAACGCGATTACTGTTACCGAAAACACAACAAGACCTACTTGGTATGCCGATGATTGTTACCTCACCGTTGTTCCTAAAGTGGGGAGAGTGACTGTTTACGGCATCGATGTGTTAACTGAGATGGCGAACACTGGATCGATCACAACAGTAAACGGGACGCGATATGTGACCGCTCACACTTATCCAGCGGATAACTGGTATGTGTACTTTACCAACGCGATTAACGTAACGATAGAAGGTGGCAGTTATCTCATGCCGACCGGCAGTATATCGCTTTACGACATTGTAAGTAATCCCGTTGATAAGACGTTCTACGTTTATATCAGGTTGAACGGAACCAAAGCGGAATATTTCGTTACGACTAAAAAGCTTTACGTTTCTAGCAAAATGTTGTTTGTTGCAACGATAACGACTAACGATAAAGGGATCAGTAACATCGATCTTCTCCAGCCGATGATGGTGGGGGATTTGGTGCTCTCTAACGTTCGTCGCGGTCAAGCAATCCCTGTTGTGGATGGCTCACTGGGTCAAGAGGCAACTGTGGTATGGAAACGCAGCCAAGATAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
060b1793765aaa4d3c6aec1b728fac85a097acbc17fb49bc30ee10adfc902fee
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,4800
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and identification of R. ornithinolytica phage and its targeted bacteriostatic effect on chilled pigeon meat Feng,S., Zhong,L., Zhou,J., Huang,Y., Sun,Y., Yuan,D. and Liang,W. 2025 — GenBank