Protein

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Genbank accession
QQO97151.1 [GenBank]
Protein name
pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MKHTLSIVLFFILSLGLNAQTVEGTVGSDGSLIPYNVSAIADVQDGTITKAKLDASLAAEIDSKTNSSEVLNLHRTSDPTSNVKESNIINAWVKATLVDLESVSTDSYIGDLSLKATKNASGSGVVYSPNYSVEIGKEYVFSCRIKVGGGFITGSNLYLSDKSGAFTQTPIDHTITDWQLVTVTLGFTKTRTRVNFSMSAQPSGAFMLIDDMKLYENEETIKAFPNAYGFGAVSTGGRGGTVRKVTNLNDSGFGSLREAAGVANTYVIFDVAGNIELSSPISVADNVTIFGQTAFRNGGQGITLKANSTNESSLMTVSGKENFTVQYIRFRRGVTPFATAATGGQNLALANSANKAIIDHCSFGWDEDESLTIWDAQQVTVSNSIINHSLKVNAYGRVKTGKGVIIGNNAEEVSLYCNLIGNADQRNALFGGSTPPLGNFEFKNNLIHNWGTAGTYFTEGTNDFKVNIIGNKWKLGNNSILNRHALQATGNTGDLFYLEGNISAERPTDDLDEWLAIGNTTTPSVNLSTSFQQLTPFDYPLQDSPTYTIEELESTVIKQMGVSLYEDKPDYGAKQDYLNGTGSHINIPSDDGGYPVLSNFTTSILDSNSDGIEDSFATTHGITSPNQIIGSYDFGDWIFDNSIGYEAIEVYAYWLTKQ
Physico‐chemical
properties
protein length:658 AA
molecular weight: 70947,80340 Da
isoelectric point:4,72385
aromaticity:0,09574
hydropathy:-0,20638

Domains

Domains [InterPro]
G3DSA:2.60.120.260
STR
81–212
G3DSA:2.60.120.260 IPR012334
G3DSA:2.60.120.260
STR
81–200
G3DSA:2.60.120.260 IPR012334
IPR052063
Unmapped
216–655
IPR052063
IPR011050
STR
220–541
IPR011050
QQO97151.1
1 658
Architecture
STR
STR 81-541 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QQO97151.1
1 658
Domain Start End Length (AA) Confidence
N-terminal 1 255 255 0,2003
Central domain 256 502 248 0,9065
C-terminal 503 658 155 0,6233
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-255
Central
256-502
C-terminal
503-658

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage Nekkels_2
[NCBI] 		2745693 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cellulophaga sp. HaHa_2_1
[NCBI] 		2749994 Bacteroidota > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Cellulophaga >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQO97151.1 [NCBI]
Genbank nucleotide accession
MT732444 [NCBI]
CDS location
range 33026 -> 35002
strand +
CDS
ATGAAACATACATTAAGCATAGTATTATTTTTTATCCTTTCGTTAGGACTAAACGCTCAAACGGTTGAGGGCACAGTAGGTAGTGACGGTAGTTTAATTCCTTATAATGTTTCAGCTATTGCGGATGTACAAGATGGAACAATTACAAAGGCTAAATTAGATGCTAGTTTAGCTGCTGAAATTGATTCTAAAACAAATTCTAGTGAGGTTTTAAATCTACATAGAACATCAGACCCAACTAGTAATGTAAAAGAATCCAACATTATTAACGCATGGGTTAAAGCTACTTTAGTAGATTTAGAATCAGTGTCTACTGACAGCTATATTGGTGATTTGTCATTAAAGGCAACCAAGAATGCTTCTGGTTCAGGTGTTGTGTATTCACCTAATTATTCTGTGGAAATAGGCAAGGAGTATGTTTTTAGTTGCAGAATTAAAGTGGGAGGTGGATTTATAACGGGTAGTAATTTATACTTATCTGATAAGTCAGGAGCATTCACACAAACACCTATAGACCACACAATTACAGATTGGCAATTAGTAACGGTAACACTTGGATTCACTAAGACAAGAACTAGAGTTAATTTCTCAATGTCAGCACAACCATCGGGAGCTTTTATGCTTATTGATGATATGAAGCTTTACGAGAATGAAGAAACTATAAAGGCATTCCCTAACGCCTACGGTTTTGGAGCAGTATCTACTGGTGGAAGAGGCGGAACAGTTAGAAAGGTTACAAACTTAAACGATAGTGGCTTTGGAAGCTTAAGAGAAGCGGCTGGAGTAGCTAATACATATGTGATTTTTGATGTTGCTGGAAACATAGAGTTGAGTAGTCCTATTTCTGTAGCTGACAATGTGACTATTTTTGGTCAAACAGCATTCAGAAATGGAGGGCAAGGAATAACATTAAAGGCAAATTCAACAAACGAATCTAGTTTAATGACCGTAAGCGGAAAGGAAAATTTTACAGTTCAATACATAAGATTCAGAAGGGGCGTTACTCCTTTTGCTACGGCTGCTACCGGAGGTCAAAACTTAGCTTTAGCTAATTCGGCAAACAAAGCGATAATTGATCATTGCTCTTTTGGTTGGGATGAAGATGAAAGTCTTACTATTTGGGATGCGCAACAAGTTACAGTTTCAAATTCAATAATTAACCACTCTTTAAAAGTAAATGCGTATGGACGTGTAAAGACAGGCAAGGGAGTTATTATTGGAAACAATGCGGAAGAAGTTTCATTGTATTGCAATCTAATAGGTAATGCAGACCAAAGAAACGCATTATTTGGAGGTTCTACACCACCACTAGGAAACTTTGAGTTTAAAAATAACTTAATACACAATTGGGGTACAGCCGGAACATATTTTACAGAAGGAACAAACGATTTCAAAGTTAATATTATTGGAAACAAATGGAAGCTTGGGAATAACTCAATACTAAATAGGCACGCTTTACAAGCTACAGGAAATACTGGAGATTTGTTTTATTTGGAAGGTAATATTTCAGCGGAAAGACCAACGGATGATTTAGACGAATGGTTAGCTATAGGCAACACAACAACGCCTTCTGTTAATTTATCTACTTCATTCCAACAATTAACACCTTTTGACTACCCTTTACAAGATTCTCCTACATATACGATAGAGGAATTGGAAAGTACAGTCATAAAACAAATGGGAGTTAGTTTGTATGAAGATAAACCAGACTATGGAGCTAAACAAGATTACTTAAACGGAACAGGTTCTCACATAAATATACCTAGTGATGATGGTGGTTATCCTGTTTTAAGTAACTTTACAACATCAATATTAGATTCTAATAGCGACGGTATAGAAGATAGTTTCGCAACTACTCATGGAATAACATCGCCAAATCAAATAATAGGCTCTTACGACTTCGGAGATTGGATATTTGACAACTCTATAGGTTATGAAGCTATAGAGGTTTACGCTTACTGGTTAACAAAACAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4b6e2e53ae958ec993de1b72730113bbb464178eede8000e06baec0d97f3359c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7877
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Highly diverse flavobacterial phages as mortality factor during North Sea spring blooms Bartlau,N., Wichels,A., Krohne,G., Adriaenssens,E.M., Heins,A., Fuchs,B.M., Amann,R. and Moraru,C. 2021 — GenBank