Protein

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Genbank accession
XRM24287.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTIPALPEKLTPVINYVVQGSENQFTFKFLVVNDDDMYVYQNGVQLPQRNYTITGIDDDAGGEVIINTTLNPLLVGDVITLSRLTLPEQLTEFLRLGDFTAEAVNAEFTRIYQLLQEFRRDINDNELSNSNLQEQISENRKEIEKLGDLSASAFKEVKEWKQGEKVTDRFQRYFYPNSAQGELSYTWNAPMASELNPITMGSTPVGDKNWQQWDVSQELVKKIISKTTNLEARTVLDMLAGITIGGEPVIIEKGQSWATSYNGRSEVSQKWNVVDVQPVTGYWIERNGLFFDLQVSAKLNLSEIGWDETLSAQQVTEKIHLGCEIARRTPQLMEINFPAGTYEANDFVIDVDKRGFKVLGAGEDSTIIVNKSINGVSMLVTRIDKRNRAKDKQHDYLTIGGFTLDGDIKNRGSEASNRAVIQPNYCKISVKSVGHIQSNMDVNGLVSNYEGHTEGRKNGSTFTKASLRLRNNAIKCTGKCYTNGEASESSSRALVCDDGKTELVGAVDSGGNKITVLNAAGIDVHDRIEIGSAPTVDVLYITEKVGNVITLDSALVNNHPDGAEVKLPVISNLFDGTIETGLVEINNAIAFNLRATYQEESRVLLRGLLPAFTMSGGSNAQVSPSVTIDNVDRRSSINIENNDAKFSVVMNLFDRNGGQTEFLDLYNMPEISIKGNTRSEARVNINGVKFNWIEVTRNYNYDTSDRYQTDFKFGGLFASARAVETVTAIGVYMSASQAGFDAYNFDIAASCRRSGSSGVKAGIMKRAGGVSTDGGSPAVDTVKVATSYPYSSDNGDRVDVILSGSSGVATVRCQGEKSGGVDTYFMLNGQISHLI
Physico‐chemical
properties
protein length:835 AA
molecular weight: 91613,50610 Da
isoelectric point:5,02868
aromaticity:0,07784
hydropathy:-0,31329

Domains

Domains [InterPro]
Coil
Unmapped
115–149
Coil IPR058969 DC_0965
IPR058969
ATT
154–210
IPR058969
XRM24287.1
1 835
Architecture
ATT
STR
ATT 154-211 | STR 226-835
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XRM24287.1
1 835
Domain Start End Length (AA) Confidence
N-terminal 1 316 316 0,9963
Central domain 317 554 239 0,9059
C-terminal 555 835 280 0,5745
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-316
Central
317-554
C-terminal
555-835

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VibP_ZCVPP1
[NCBI] 		3411026 Viruses > unclassified bacterial viruses >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XRM24287.1 [NCBI]
Genbank nucleotide accession
PV295601.1 [NCBI]
CDS location
range 23039 -> 25546
strand +
CDS
ATGACCATTCCAGCTTTACCAGAGAAATTAACACCAGTAATCAACTACGTGGTGCAGGGCAGCGAAAACCAATTTACTTTTAAATTCTTGGTTGTGAATGACGATGACATGTACGTGTATCAAAATGGCGTACAGCTTCCACAGCGTAACTACACAATCACAGGCATTGATGATGATGCTGGTGGCGAGGTGATAATTAACACCACGCTTAACCCGCTATTAGTTGGTGATGTGATCACTTTGTCACGCTTAACGCTTCCAGAGCAGCTAACAGAGTTCTTGCGCCTTGGCGACTTTACAGCAGAAGCGGTAAACGCAGAATTCACGCGCATCTATCAATTGCTTCAGGAGTTCCGTCGGGATATCAACGACAACGAACTAAGCAATAGCAACCTTCAAGAGCAAATATCAGAAAACCGAAAAGAAATAGAAAAGCTAGGTGATTTGTCGGCATCTGCTTTTAAGGAGGTAAAGGAGTGGAAACAAGGCGAGAAAGTAACGGATAGATTTCAGCGCTACTTTTATCCAAACTCAGCGCAAGGAGAGCTATCCTATACATGGAACGCGCCAATGGCGTCGGAATTAAACCCAATAACAATGGGAAGTACGCCAGTAGGAGATAAAAACTGGCAGCAGTGGGATGTTAGCCAAGAGCTGGTGAAGAAAATAATTTCAAAAACAACAAACTTAGAGGCGCGCACGGTCTTGGATATGCTTGCTGGAATTACCATTGGTGGGGAGCCTGTAATTATAGAAAAAGGGCAATCATGGGCTACATCATACAACGGAAGGTCGGAGGTAAGTCAGAAATGGAATGTGGTTGATGTACAGCCAGTTACAGGTTACTGGATAGAAAGAAATGGATTATTCTTTGATTTGCAGGTGTCAGCAAAGCTGAATCTATCAGAGATAGGGTGGGATGAAACGCTAAGCGCCCAACAAGTTACTGAAAAGATACACCTAGGATGCGAGATAGCAAGAAGAACACCTCAGCTTATGGAAATAAACTTTCCAGCCGGAACATACGAAGCAAATGATTTCGTTATCGATGTGGACAAGAGGGGGTTTAAGGTATTAGGTGCTGGTGAGGATTCAACCATTATCGTGAACAAGTCGATAAATGGAGTGTCGATGCTGGTAACAAGGATAGACAAAAGGAACAGAGCAAAAGACAAGCAGCACGATTACCTAACAATCGGCGGCTTTACACTGGATGGGGATATAAAAAACAGAGGAAGCGAGGCATCAAATAGGGCGGTAATACAGCCAAATTACTGCAAGATTTCAGTTAAATCAGTGGGGCACATTCAAAGTAATATGGATGTAAACGGACTGGTATCAAATTACGAGGGGCACACTGAGGGAAGAAAGAATGGCTCAACATTTACGAAAGCAAGTCTGAGATTGAGAAATAACGCAATAAAGTGCACTGGAAAGTGCTACACAAATGGCGAAGCATCGGAGAGTTCAAGCAGAGCATTGGTTTGCGATGATGGGAAAACAGAGCTAGTTGGGGCGGTGGACTCTGGAGGGAACAAGATTACCGTGTTAAATGCCGCAGGAATTGATGTTCACGACAGGATTGAAATTGGTTCAGCGCCAACGGTTGATGTTTTATATATAACAGAAAAGGTTGGAAATGTAATAACGCTAGATAGCGCATTAGTCAACAATCATCCAGACGGAGCAGAGGTAAAGCTTCCTGTAATATCAAACTTGTTTGATGGAACAATAGAAACGGGTCTTGTTGAAATCAACAATGCAATTGCATTCAATTTAAGGGCGACATACCAAGAGGAGTCAAGGGTTTTACTTAGAGGGCTTCTTCCGGCATTTACCATGTCAGGAGGGTCAAACGCACAAGTGTCACCAAGCGTGACAATTGACAATGTAGACAGAAGGTCGTCAATTAACATAGAGAACAATGACGCAAAATTCTCAGTGGTAATGAATCTTTTTGATAGAAATGGCGGGCAAACTGAATTCCTAGATCTTTACAACATGCCGGAGATTTCAATAAAGGGAAATACGAGGTCGGAAGCTAGGGTAAATATAAATGGAGTAAAGTTTAACTGGATTGAAGTAACAAGAAACTACAACTACGACACAAGCGACAGATATCAGACAGATTTTAAGTTTGGCGGATTATTTGCTAGCGCAAGAGCGGTTGAGACAGTAACTGCAATTGGAGTGTACATGAGCGCGTCTCAGGCTGGATTTGACGCGTACAACTTTGACATTGCAGCATCATGCAGAAGAAGTGGTTCTTCCGGGGTAAAAGCAGGGATAATGAAAAGAGCGGGCGGAGTTAGTACGGACGGCGGCTCGCCAGCAGTAGATACGGTAAAAGTAGCTACGTCATACCCGTACAGTTCGGATAATGGAGATAGAGTTGACGTTATTCTATCTGGAAGTAGCGGCGTGGCGACGGTAAGATGTCAAGGGGAAAAGTCCGGCGGCGTCGATACGTACTTTATGTTGAACGGTCAAATAAGTCATTTAATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
4c712b678bf1710427423ab7b7aca71f443e0601c6593e6a6de2506725af1706
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5787
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50