Protein

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Genbank accession
QPI17925.1 [GenBank]
Protein name
long tail fiber proximal subunit
RBP type
TSP
Evidence RBPdetect
Probability 0,80
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MVAKSFRVTNGLDAAGEKIINVGKASPTVLSDGVNVEFFNEFNSVNQYDPTRGYAAFMSVIYSRRLWYSRAAIPSPAGEFDETKWFSTRVDPKWEYINVTTSNGLDVTAGQYIVADARFSEHIYNLPSNPIEGDTLVIKDGGGTVAVNSITIRSSTRQMRVRDLSMPAYRITHPYAMITLIYSGMVWRVCEERNILDAQFVRSSASQFQLSAGMNLFRYSGTGEIKLQLPKYANDGDSIKTADLDGMNAINKAVLQVFPGSGHTITVGSTNGLTSTESRTSGHGEFIFDSLDNRWIVYDADNEHRLKRINGDYNLIPGDYIYVTGDTAVTGIDTTLTLPTNVADGDEIEISLYQMVKGQDCTIRVTPSSTDVIRTNKAMLQFPKRSDYPPETTWFTSTSLTFNADDDYMPYLKLSYNASTKEWIVAMHQTIVERVDPQKKSRYGLIRLSTIEQANVDIENNPSKDSAITPETLAQRVALENRRGIARLGTTAEVNQDSTAVYLDDVIVTPKKLNERTATETRRGLAEIATQAEVNAGTDDTVIVTPKKLDTRRASETLAGISQLVTTGASTSEGALRGDAGTNVYNFNENTKTITAKSLNEKTATEKSKGLVVLGTENEVVTGAAGTASMPIVVTPEQLHKKTATESRIGFSEIATQAEVNAGTDDFRFVTPKKFNDRNATETLTGISALATQAEVSTGTNATKAIVPLKLKTYFDVASHVAVAAADGLTQSGTIWNTVNIGILAATETQRGTLRIATQGETNTGTIDNAFLTPAKLHNKKATTTTEGIIRCATNTEAAAGAANNIAITPATMQFLNGTDPAWGATTTRRGAVFITTKESTFIGNDTVGSTEAVDNYQEDYYAVSPRGLNFALVNFLPKNATAQNSLSLGSVIASSWLRRDIAQTVTGALTLQAASVFTGTVTASNTVAVSGVLNLTGDVNSSKTINLNTVPNNVYGISQLFSGASGLRYLRTFRSGATGTIWHESVNGDSYILSTGASNGNFNVLNIGNGSNSTMEYTGRILRVGGKQVIDSQSGVLVFGDSVTTIRMNSGSWDGLTVSNDSGVNTGIVLNTRNFQTHLDSTYVNVSGDTMSGALTAPAFVATNINYPAVSLISTNANIPIEKRALILETNTTGDLNIIFRNPTTSANHSIVTVAAGASGTVYHTGNRPTPADIGAVSLTGSTVMDLIVTNSLKIGNVRITANPITKTCEFTWEP
Physico‐chemical
properties
protein length:1216 AA
molecular weight: 130574,35930 Da
isoelectric point:5,62481
aromaticity:0,07072
hydropathy:-0,20140

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPI17925.1
1 1216
Domain Start End Length (AA) Confidence
N-terminal 1 291 291 0,9032
Central domain 292 597 307 0,1290
C-terminal 598 1216 618 0,5192
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-291
Central
292-597
C-terminal
598-1216

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage POP12
[NCBI] 		2741065 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPI17925.1 [NCBI]
Genbank nucleotide accession
MT560058 [NCBI]
CDS location
range 85925 -> 89575
strand +
CDS
ATGGTCGCAAAATCATTTCGCGTTACCAACGGCCTTGACGCCGCTGGAGAAAAAATTATCAATGTAGGTAAAGCAAGTCCTACAGTATTATCTGATGGTGTTAACGTTGAATTCTTCAATGAATTTAACTCTGTGAACCAATACGATCCAACAAGAGGATATGCGGCTTTTATGTCCGTTATCTATAGTCGTAGATTGTGGTATTCTCGCGCTGCTATTCCATCGCCTGCTGGTGAATTTGACGAAACGAAATGGTTTTCTACTCGCGTCGATCCAAAATGGGAATACATCAACGTTACTACATCAAACGGTCTGGATGTAACGGCAGGTCAGTATATCGTTGCTGATGCTCGTTTCTCAGAACATATCTATAACCTTCCGTCTAACCCTATTGAGGGCGATACGCTTGTTATTAAAGATGGCGGCGGTACTGTAGCAGTTAATTCAATCACTATTCGTTCATCAACAAGACAAATGCGCGTTCGTGACTTGTCTATGCCTGCATACAGGATCACTCATCCTTATGCTATGATTACGCTGATTTATAGCGGTATGGTATGGCGTGTATGTGAAGAGAGAAATATTCTTGATGCTCAATTTGTTCGTTCGAGTGCATCGCAATTTCAATTATCTGCTGGTATGAATCTTTTCCGGTATTCCGGTACTGGTGAAATTAAATTACAGTTGCCAAAATATGCAAATGATGGTGATTCAATAAAGACCGCCGATCTTGACGGTATGAACGCAATCAATAAAGCAGTATTGCAGGTATTCCCAGGATCTGGTCATACAATTACAGTCGGGTCTACTAATGGTTTGACATCAACAGAAAGCCGCACATCAGGCCATGGGGAGTTTATTTTCGATTCCCTTGATAATCGATGGATTGTCTATGATGCTGATAATGAGCATCGATTGAAGCGCATTAACGGCGATTATAACTTGATTCCGGGCGATTATATCTATGTAACAGGCGATACCGCAGTTACAGGTATTGATACGACGCTTACATTACCTACAAACGTTGCTGATGGCGATGAAATTGAAATATCTTTGTATCAGATGGTTAAAGGTCAGGATTGTACGATCCGTGTTACTCCATCAAGTACAGACGTAATTAGAACAAACAAGGCGATGCTGCAATTTCCTAAACGTTCTGATTATCCGCCTGAAACGACATGGTTTACATCAACAAGTTTAACGTTTAATGCTGATGACGATTACATGCCTTATCTGAAATTGTCTTATAATGCATCAACAAAAGAATGGATTGTTGCAATGCATCAAACTATTGTTGAGCGTGTCGATCCGCAAAAGAAATCAAGATATGGTTTGATTCGTTTGTCAACCATTGAACAGGCTAACGTAGATATTGAGAATAACCCATCAAAGGATTCTGCTATTACTCCTGAAACTCTGGCGCAACGTGTTGCTCTGGAAAATCGTAGAGGTATTGCAAGATTAGGAACAACCGCAGAAGTTAATCAAGATTCTACTGCTGTTTATCTGGATGACGTTATTGTTACGCCTAAGAAACTTAACGAAAGAACTGCGACAGAAACAAGACGTGGTTTAGCTGAAATCGCTACTCAGGCAGAAGTTAACGCAGGCACTGACGACACCGTTATTGTTACGCCTAAAAAGCTAGACACGCGCCGTGCATCGGAAACACTAGCTGGTATTTCTCAACTGGTTACTACTGGTGCTAGTACGTCAGAAGGTGCATTAAGAGGTGACGCAGGAACAAACGTTTATAACTTCAATGAAAATACCAAAACCATTACAGCAAAATCGCTGAATGAAAAAACAGCAACCGAAAAATCAAAAGGTTTGGTTGTGCTTGGTACAGAAAATGAGGTTGTAACTGGTGCTGCTGGGACTGCTTCAATGCCGATTGTTGTTACTCCCGAACAGTTGCATAAGAAAACCGCAACCGAAAGTCGTATAGGGTTTTCTGAAATTGCTACGCAGGCAGAAGTTAACGCAGGCACTGACGATTTCAGATTTGTTACACCTAAGAAGTTTAATGATCGTAATGCAACTGAAACATTGACAGGCATTTCGGCTTTAGCTACTCAGGCGGAAGTATCAACAGGTACTAACGCAACTAAAGCGATTGTTCCTTTGAAATTGAAAACTTATTTTGACGTTGCAAGTCATGTTGCGGTTGCTGCTGCTGATGGTTTGACTCAATCCGGTACGATCTGGAATACAGTGAATATAGGAATTCTTGCTGCAACAGAAACTCAGCGAGGTACATTGAGGATCGCAACGCAAGGAGAAACCAATACAGGGACTATTGATAATGCATTCTTGACGCCTGCTAAATTACACAACAAGAAAGCGACTACAACCACAGAAGGTATTATCAGATGTGCGACCAATACAGAAGCCGCAGCAGGAGCAGCAAATAACATTGCGATTACTCCTGCAACTATGCAGTTTTTGAACGGTACAGATCCAGCATGGGGAGCAACAACCACAAGGCGCGGTGCTGTATTCATTACAACAAAAGAATCAACTTTTATCGGTAATGATACAGTCGGTTCGACAGAAGCAGTCGATAATTATCAGGAAGATTACTACGCTGTTTCGCCAAGAGGTTTAAACTTTGCCTTGGTTAATTTCTTACCTAAGAATGCAACCGCACAGAATAGTTTAAGTCTTGGTAGTGTGATTGCATCAAGCTGGTTGCGTCGTGATATAGCACAAACTGTAACTGGTGCATTGACCTTACAAGCGGCTTCTGTCTTCACAGGGACTGTTACGGCGTCAAATACGGTTGCTGTTTCTGGTGTTCTTAATTTGACTGGTGATGTTAACTCATCAAAAACCATAAATCTTAATACCGTTCCTAACAACGTATATGGGATTTCTCAGTTGTTTAGTGGCGCGTCAGGTTTGCGATATCTTCGTACTTTCCGTAGTGGTGCTACCGGAACAATTTGGCATGAATCTGTTAATGGTGATAGTTATATACTAAGCACTGGTGCAAGTAACGGTAATTTTAATGTTCTGAATATCGGCAACGGTTCGAATAGTACAATGGAATATACCGGAAGAATATTGCGCGTTGGTGGAAAACAAGTAATAGATTCTCAATCTGGTGTATTGGTATTTGGTGATAGTGTCACGACAATAAGAATGAACTCAGGTTCATGGGACGGCTTAACAGTAAGTAATGATTCTGGGGTGAATACAGGAATTGTTCTGAATACTAGAAATTTCCAAACTCATCTGGATTCAACCTATGTTAATGTTTCCGGCGATACAATGTCTGGTGCTCTTACCGCTCCTGCATTCGTAGCAACCAATATTAATTATCCAGCAGTTTCTTTGATTAGTACAAACGCAAATATTCCAATAGAAAAGCGCGCACTCATATTGGAAACTAATACAACTGGTGATTTGAATATCATTTTCAGGAATCCTACAACGAGTGCAAACCATAGTATTGTTACAGTTGCTGCTGGTGCTTCTGGTACTGTGTATCACACAGGAAATAGACCAACTCCTGCTGATATTGGTGCAGTATCATTAACAGGTTCTACCGTTATGGATCTGATTGTGACCAACTCACTGAAAATTGGTAATGTAAGGATTACCGCAAACCCTATAACGAAAACGTGTGAATTCACATGGGAACCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bf73c22b5f531daec1caad30ba7a5df0fc4a4e1b77baa913253717ebd4e06910
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5519
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50