Protein

View in Explore
Genbank accession
AUR92724.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTDCSSYPTKSTAQTFKLDAETVNEVVTSSDDRTPPASDGLTKKTLAGIENDASNQLADIQQRADEQYSDINNQYVLRNKGDYATDPLLEFYYEFTDFNGLIYFPIVAPYQVDSATYPDPSSDPNLRLGQATDDSLITSTGSTTPRRLDDRFADVVNVMDFGAVGDGASDDTGSIQLAIDNNNHVAISGGTFLLSGVLTIPQGKTVVFIDAKVNITGSLVWNGRILSNRDHIFIYTDVVTSFSGTPQNEFLYPEWFGATKSTTEQDTTVAINDCLQAARNLRNYHVKLDNTRGLVNSYYWVDTVLIPRDVTLEGAARGMTVFRPVSSKIAGPIITDDPATGAAAIKLKKFNVDCMGVAGLTGIDLGHNPAFVWGVEGFIEDVYVRDADVDGFSLLGSVTYCHRIAAVNCKRGIRLEGGSISISSSTVDSSEIHLSMTGGGHKVTSTHFEGRYNLGAGDITTYIEFDSGATECQLNCITLLHSADPAESVIALRDNTTRNSFTQLSVTGGVFSSLSVPFLKDETVRNGTTAGAVTEYYQNGISQIAVIDDSMLSEFNEFNMLNNVVSEYIYIGNHPTGSSVSFRLPSTRANFEGMKITITNATASSYIRVTPGTGDTGSPFYGTASTMYIDPQTSMSFYLGDGVIYSSPYKDTNS
Physico‐chemical
properties
protein length:654 AA
molecular weight: 70735,56500 Da
isoelectric point:4,55237
aromaticity:0,09327
hydropathy:-0,18869

Domains

Domains [InterPro]
DC_0489
STR
1–653
DC_0489
IPR012334
STR
133–244
IPR012334 IPR012334
IPR011050
STR
153–211
IPR011050
IPR024535
ENZ
156–204
IPR024535
AUR92724.1
1 654
Architecture
STR
STR 1-653 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR92724.1
1 654
Domain Start End Length (AA) Confidence
N-terminal 1 201 201 0,8921
Central domain 202 526 326 0,9686
C-terminal 527 654 127 0,9229
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-201
Central
202-526
C-terminal
527-654

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.176.O._10N.261.55.F5
[NCBI] 		1881215 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio breoganii
[NCBI] 		553239 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR92724.1 [NCBI]
Genbank nucleotide accession
MG592543.1 [NCBI]
CDS location
range 16707 -> 18671
strand +
CDS
ATGACTGATTGTAGTTCATATCCAACCAAATCAACGGCGCAAACATTTAAGTTAGATGCTGAAACAGTAAACGAGGTTGTTACTTCTAGTGATGATCGCACACCACCAGCTAGTGATGGGTTAACGAAAAAGACGCTTGCAGGTATCGAGAATGATGCATCAAATCAACTTGCAGATATTCAACAGCGAGCAGATGAGCAATACTCTGATATCAACAATCAGTATGTTCTACGCAACAAAGGCGATTACGCAACAGACCCTCTGCTAGAGTTTTACTATGAGTTTACTGATTTTAATGGGTTGATTTACTTTCCTATCGTTGCGCCATATCAGGTTGATAGCGCTACATACCCAGACCCATCAAGTGACCCGAATTTAAGACTAGGTCAAGCTACAGATGATAGCCTTATCACATCAACAGGAAGCACAACCCCAAGACGATTGGATGACCGCTTTGCTGATGTTGTTAATGTTATGGATTTTGGCGCGGTTGGTGATGGCGCAAGCGATGATACTGGCAGCATTCAGCTTGCCATAGATAACAATAATCATGTCGCAATTAGCGGCGGAACTTTTTTGTTGTCAGGGGTGCTGACAATCCCGCAAGGGAAAACCGTTGTGTTTATTGATGCAAAAGTAAATATTACCGGGAGCTTAGTTTGGAACGGTCGGATATTATCTAATAGGGATCACATTTTCATTTACACTGACGTTGTAACGAGTTTTTCTGGAACACCGCAAAATGAATTCTTATATCCAGAGTGGTTCGGGGCCACTAAGTCAACGACAGAGCAAGACACAACCGTGGCAATAAATGACTGCTTGCAAGCAGCCAGAAACTTGCGAAATTATCATGTAAAACTTGACAACACAAGAGGGTTAGTTAATAGCTATTACTGGGTTGATACCGTTCTTATCCCTAGAGATGTAACGCTAGAAGGTGCAGCCAGGGGCATGACCGTGTTTAGACCGGTTTCCAGCAAAATAGCAGGCCCTATAATCACAGATGATCCAGCAACCGGCGCTGCTGCTATTAAGCTAAAGAAATTTAATGTTGACTGCATGGGTGTGGCCGGGCTAACCGGAATCGATCTTGGCCACAATCCTGCGTTCGTATGGGGCGTAGAAGGTTTCATTGAAGATGTTTACGTAAGAGATGCTGATGTTGACGGATTTAGCTTACTAGGATCAGTTACATACTGTCACAGAATTGCAGCAGTAAACTGCAAAAGAGGAATCCGACTGGAAGGCGGTAGCATTTCCATTTCATCAAGCACAGTAGACTCATCTGAGATACACCTATCAATGACCGGTGGAGGACACAAGGTGACTAGCACTCATTTTGAGGGCAGGTATAACCTTGGCGCTGGTGACATTACCACATATATAGAGTTTGACAGCGGAGCTACAGAGTGCCAATTAAATTGCATAACTCTGCTACATTCAGCAGACCCAGCAGAGTCGGTTATTGCACTTAGAGACAATACAACAAGGAATTCTTTTACACAGTTAAGCGTCACTGGTGGTGTTTTCTCTTCGCTTAGCGTCCCATTCCTAAAAGATGAAACCGTAAGGAATGGAACTACAGCTGGGGCCGTAACAGAATATTATCAAAACGGCATTAGCCAAATCGCAGTAATTGATGACTCTATGCTCAGTGAGTTTAATGAGTTTAATATGCTAAATAACGTTGTTAGCGAATATATTTATATAGGTAATCACCCAACAGGAAGCAGCGTTAGCTTTAGACTCCCATCCACTAGAGCTAATTTTGAGGGAATGAAAATCACAATAACCAATGCCACGGCATCAAGCTACATAAGAGTAACACCCGGAACTGGCGATACAGGTAGCCCATTTTACGGTACTGCATCAACGATGTACATAGACCCTCAAACAAGCATGTCATTTTACCTGGGTGATGGAGTAATATACTCTTCGCCGTACAAAGACACAAATAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
47c5b00822b81b1dad5d02d32854cf06722b5b7c357f01a4d8cdb89b7a752154
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7973
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank