Protein

View in Explore
Genbank accession
AQZ54569.1 [GenBank]
Protein name
putative tail tip protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MKKIIYFETPSHEPEIYNVESVEKWALEKFSKPIQGLRIFLNEISNENDISLRIFGEPELLEKDDNTYIFTVTPTGGVLDAVGKVITTVLNPILKILMPRQSTPTSAIANNRVNSSNNSMVNRTNEPRPGERIPDIVGYVRAYPDLLMDYKIFYDSQEYETQFLCLGRGEYQCEDIRDGITPLKNIAGSSLASYSKGNSPGNGEPDFTIGQQIDIEKFPIMIVKSSNEADGSELRPPNYNELKHFTLKVSKSGDVFTKAEDPIKWDERLNVGAIIKLSGVNSWEKHIIVDETTGAETVDYVRHNLSGEYEVLIIGDDYLKLNVEGITGWEFLSDEGEEPKKEAWKNPSTGRYLFSEQNGWVKETYEIGLKPIEEFVIGPYLMEDSPEIMINLYCQNGLYKTDGTVYPTEVTCELILSHPENKDNTVFRYPVTVKGMMTDAVGATLRVKNPYPDAVNVSMKRIDNTDKGFNGSVIDAVKWRDLYAVTPLDPQDYGNVTLFQTVTKATVAALKLKERKLNLRATRVYNGVAKRNFADVIIGMHTDPMIGRRKLDSLDVEELRRTEQQLLDYFGDKRSIECGFTFDQVSYTYEDGLQVIGDTVNCTPYQVGNMIYFWAELPQDKSSMQFGHPFKIPNTDKRTRNFSATKDYTGVQVKYFDHGSNTFEYVEKGEQTNMLKIDLKGCQSKYLANIRANREYNKLKLQRVTHVFTANSIGLQASVGMRVDVVDNTRIKQNEGRIENIEGNILTLSEPLNLNDNYSYWMSINNRFGNLENIPIRVIDKWTVEMLEKPVSEIYTGWNRDKTSYVIHADDNLSSLAMLVTNVEPQARDNNYSVSITCSNYDSRYYKDDKGA
Physico‐chemical
properties
protein length:852 AA
molecular weight: 96945,16730 Da
isoelectric point:5,11167
aromaticity:0,09742
hydropathy:-0,51115

Domains

Domains [InterPro]
DC_0118
STR
1–714
DC_0118
NF040662
Unmapped
384–847
NF040662
DC_0808
RBD
711–852
DC_0808
AQZ54569.1
1 852
Architecture
STR
RBD
STR 1-714 | RBD 715-852
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AQZ54569.1
1 852
Domain Start End Length (AA) Confidence
N-terminal 1 240 240 0,9613
Central domain 241 439 200 0,5365
C-terminal 440 852 412 0,1421
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-240
Central
241-439
C-terminal
440-852

Taxonomy

  Name Taxonomy ID Lineage
Phage Proteus phage VB_PmiS-Isfahan
[NCBI] 		1969841 Uroviricota > Caudoviricetes > Gorganvirus >
Host Proteus mirabilis
[NCBI] 		584 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AQZ54569.1 [NCBI]
Genbank nucleotide accession
KY742649 [NCBI]
CDS location
range 27898 -> 30456
strand +
CDS
GTGAAAAAAATAATTTACTTTGAAACACCTAGTCATGAACCAGAAATATATAATGTTGAATCTGTTGAAAAATGGGCTTTAGAGAAGTTTTCAAAACCGATTCAAGGATTAAGAATATTCTTGAATGAAATTTCAAATGAGAATGATATTAGTTTAAGAATATTCGGAGAACCTGAATTATTAGAAAAAGATGATAATACCTATATATTTACAGTCACTCCTACTGGAGGTGTTTTAGATGCTGTTGGTAAAGTGATTACAACAGTGCTCAATCCTATTTTAAAAATATTAATGCCTAGACAGAGTACGCCTACTTCTGCCATTGCTAATAACCGTGTTAATTCGTCTAATAACTCCATGGTCAATCGTACCAATGAACCAAGACCAGGTGAACGAATTCCGGACATTGTAGGCTATGTTCGTGCTTATCCTGATTTATTGATGGATTATAAGATATTTTACGATAGTCAAGAGTATGAAACACAGTTCCTCTGTTTAGGGCGTGGTGAGTATCAGTGTGAAGATATTAGAGATGGTATTACACCATTGAAAAATATTGCTGGATCTAGTTTAGCATCTTATTCAAAAGGTAATTCACCTGGTAATGGAGAACCTGATTTTACTATAGGTCAACAAATAGATATTGAAAAGTTTCCTATTATGATAGTGAAATCAAGTAATGAAGCCGACGGTTCAGAATTACGTCCACCCAACTATAACGAGTTAAAACATTTCACTCTCAAAGTTTCAAAATCTGGTGATGTGTTTACAAAAGCAGAAGATCCTATTAAATGGGATGAACGTTTAAATGTTGGTGCAATAATAAAGTTATCAGGTGTCAATTCTTGGGAAAAACACATTATTGTCGATGAAACAACCGGTGCTGAAACTGTCGATTATGTTCGTCATAATTTATCAGGGGAATATGAAGTATTAATTATCGGTGATGATTACTTAAAATTGAATGTTGAGGGTATAACCGGTTGGGAATTTTTATCTGACGAGGGTGAAGAACCTAAAAAAGAAGCATGGAAGAATCCTAGCACCGGTAGATATTTATTTTCAGAACAAAATGGATGGGTTAAAGAAACATATGAAATAGGATTGAAACCTATTGAAGAGTTTGTAATAGGTCCTTATCTCATGGAGGATTCACCGGAAATAATGATAAACCTATATTGTCAAAACGGTTTGTATAAAACTGACGGTACTGTCTACCCTACTGAAGTAACCTGTGAATTAATATTGAGTCATCCTGAAAATAAAGATAATACTGTTTTCAGATACCCCGTGACAGTTAAAGGAATGATGACTGACGCAGTTGGGGCAACACTTAGAGTTAAGAATCCTTATCCAGATGCAGTAAACGTAAGCATGAAACGAATTGATAACACTGATAAAGGGTTTAACGGATCAGTAATTGACGCTGTAAAATGGCGAGATTTATACGCTGTGACTCCGCTTGACCCACAGGATTATGGTAACGTAACACTATTTCAAACAGTAACTAAAGCTACTGTAGCAGCATTGAAACTCAAAGAAAGAAAATTAAACTTGAGAGCTACTAGGGTGTATAACGGGGTTGCAAAAAGAAATTTTGCAGATGTAATAATCGGTATGCACACAGATCCTATGATAGGGCGTAGAAAGTTAGATAGTTTAGACGTTGAAGAATTACGTCGAACAGAACAACAGTTGTTAGATTATTTTGGTGACAAACGTTCAATCGAATGTGGGTTCACTTTCGATCAGGTTTCGTACACTTATGAAGATGGTTTACAAGTCATTGGTGACACCGTTAACTGTACACCTTATCAAGTTGGGAACATGATTTATTTTTGGGCTGAACTACCACAAGATAAATCTTCTATGCAATTCGGACACCCTTTCAAGATACCTAACACAGATAAAAGAACTAGAAACTTCAGCGCAACTAAAGACTATACAGGTGTTCAAGTTAAGTATTTCGATCATGGGTCTAATACTTTCGAATACGTAGAGAAAGGGGAACAGACAAACATGTTAAAGATTGACTTGAAAGGGTGTCAATCTAAATATTTAGCTAATATAAGAGCTAACAGGGAATATAACAAACTTAAACTACAACGAGTCACGCATGTATTTACTGCTAACTCAATAGGTCTACAAGCCAGTGTAGGAATGCGTGTAGATGTTGTGGATAATACTAGAATCAAACAGAATGAGGGTAGAATTGAGAATATTGAAGGAAATATTTTAACTTTATCAGAACCTTTAAATTTAAATGATAATTATTCTTATTGGATGAGCATTAATAATCGTTTTGGTAATCTTGAGAATATACCTATTAGAGTTATAGACAAATGGACAGTAGAAATGTTAGAGAAACCAGTTAGTGAAATATACACAGGGTGGAACAGGGATAAAACAAGTTATGTAATTCATGCTGATGATAATTTAAGTTCTTTAGCAATGTTAGTAACTAATGTAGAACCGCAGGCGAGAGATAACAATTATTCAGTAAGTATTACTTGTTCTAATTACGATAGTAGATATTATAAAGATGATAAAGGGGCTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
efcf44cfeb519d11fe274dda2114e66519a59d8f70ee34da2c0ccf65e470bbb6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2842
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analyses of a novel bacteriophage (VB_PmiS-Isfahan) within Siphoviridae family infecting Proteus mirabilis Yazdi,M., Bouzari,M. and Ghaemi,E.A. 2019 30149052 GenBank