Protein

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UniProt accession
M1T238 [UniProt]
Protein name
Structural protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,71
Protein sequence
MALTRLKNIITSRTGRIIYVNPDDFDASDSIDNRGNSSLRPFKSLQRAFLEVARFSYRVGLSNDEFDAFSILLYPSEYIVDNRPGEVLYTNIPPLDANSNMDVTSPNNVLYKFNSVEGGMIVPRGCSLVGMDLRRTKIIPKYVPYPTTFPAKGINTEEQVPSKTAIFRVTGGCYFWQFSLFDGDPTGVYYKPDDSETIPPSYSHHKLTGFEFADGNNTLSQLINDLGTVENSAEITGSSIPNLLERTDLDIYYQKVSRGFATIPDTSGDPATDQIQARVEENRIVGPISDEFRVLQITRNGNTATAITVDEQNNPKNHGFSVGVNVNISGVTGSTGPQTDLDAQLYNGSFAVTSASGNVFTYQLAEEPSGNAVGSNIVVKVEIDTVDSASPYMFNLSLRSVWGMNGMHADGAKATGFKSMVVAQYTGLSLQKDDRAFVKYNATTGNYDEGGPGAHLDGFAEYKKGWRHTHVMCSNDSFIQVVSVFAVGYADHFAGFQGADMSITNSNSNFGNTALRSKGFKRAAFTKDKAGTLTHIIPPKSLADVDEISVNWTNIDIKRTLTINPALAGQGGVLGSRLYLYGYTNETAPPPNKVQGYVIGARQDGLGANAVPDKINCLLIPSPGSAPEIKTAEINPFGPDVSGTSAGGDGSPIQFDSSTYTIGGVANTVGGWYISVNATDNQIYQTLVNNSSSGNPPGTYANLNFTPTTFIKRVPDARNLTDRTYRVRYVIPKDQNPPLPRSPIAGFVLQPNNTDNTDYKLSKCYYIYDIQEVQKFERGISDGIFYLTLLCGSISPTTSNFDDMAFSQNVNEVYPAFDRDNPNADPAASVSVADNETIGLVYGTDGASPVPARDDQRSITKEAILFLLNDTGWVAGSSPGWNSINNTLSGIDLTARLGDEETRKIPILEDSANNDALVPINVELRRHSILRSGNHTFEYTGFGPGNYSTAFPQTQVETLSDEQIRLSQSLKEEAGVAFYSGLNSNGDLFIGNQVINPVTGQITSEDIAQLNVLGEENTTIETFSEVVITDKLTVIGGASNNLESIFSGPATFQGTITSQKDILAKKLTYNNQDGTVLKSTLLAPELKTGTPPVGQGTPDLSAVLNYNAPSDGDIVYNIDWEPGKNLGWMYYESVWYKFGLTNTDVFQFGEYDSSYPQHIGLGRAPSSTYRLEVEGSQRITGDLRVDGRGGVAPDKYITRRTQGDGSTLNYQITSYAGVVHNSKSVIVTINGVLQHPDVNYTVDSNGTNVVFASGDAPTSNDFVEIRELPI
Physico‐chemical
properties
protein length:1270 AA
molecular weight: 137791,13440 Da
isoelectric point:4,77575
aromaticity:0,09370
hydropathy:-0,33488

Domains

Domains [InterPro]
DC_0066
STR
1–1268
DC_0066
IPR023366
STR
296–379
IPR023366
M1T238
1 1270
Architecture
STR
STR 1-1268 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
M1T238
1 1270
Domain Start End Length (AA) Confidence
N-terminal 1 91 91 0,9558
Central domain 92 301 211 0,9345
C-terminal 302 1270 968 0,1028
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-91
Central
92-301
C-terminal
302-1270

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SSM4
[NCBI] 		536466 Uroviricota > Caudoviricetes > Pantevenvirales > Greenvirus > Greenvirus ssm4
Host Synechococcus sp. WH 8018
[NCBI] 		166322 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGG54080.1 [NCBI]
Genbank nucleotide accession
HQ316583 [NCBI]
CDS location
range 11295 -> 15107
strand +
CDS
ATGGCACTAACTCGTCTTAAGAATATTATCACGTCCCGTACGGGTCGTATCATTTACGTCAACCCTGACGACTTTGATGCCAGTGATAGTATTGACAACAGAGGTAACTCCTCACTCAGACCGTTCAAATCTCTGCAACGTGCATTCCTTGAGGTGGCACGTTTCTCATATCGTGTTGGATTAAGTAATGACGAGTTTGATGCCTTCAGTATTCTCTTATATCCTTCAGAGTATATTGTTGACAACAGACCTGGCGAAGTATTATATACAAATATTCCCCCATTAGACGCTAACTCCAACATGGATGTTACGTCTCCTAACAACGTATTATATAAATTTAATTCAGTTGAAGGTGGTATGATCGTACCTAGAGGTTGTTCTCTAGTTGGTATGGATCTTAGAAGGACTAAGATTATTCCTAAGTACGTTCCTTATCCTACAACATTCCCTGCTAAAGGTATCAACACCGAGGAACAGGTTCCTTCAAAAACTGCTATCTTCCGTGTTACAGGTGGTTGCTATTTCTGGCAGTTCAGTTTATTTGATGGTGATCCTACAGGTGTATATTACAAACCTGATGATTCAGAGACAATCCCACCATCTTATTCACACCACAAACTTACAGGTTTTGAATTCGCAGACGGAAACAATACATTAAGTCAATTAATTAACGACTTGGGAACTGTAGAAAACTCTGCAGAGATTACAGGTTCATCTATCCCGAACCTATTAGAAAGAACTGACCTAGATATCTATTATCAGAAAGTATCTCGTGGTTTTGCTACCATCCCTGATACATCTGGAGACCCTGCAACTGACCAAATTCAGGCAAGGGTAGAAGAAAACAGAATCGTTGGACCTATCTCAGATGAATTTAGAGTTCTCCAAATTACACGCAATGGCAACACTGCTACAGCAATTACAGTTGACGAGCAGAATAACCCTAAGAACCACGGATTTTCTGTTGGTGTTAACGTTAACATTTCTGGTGTCACTGGATCTACTGGACCCCAAACAGACTTAGATGCTCAATTATATAATGGTTCGTTCGCTGTTACTTCAGCATCTGGTAACGTATTCACTTATCAGTTAGCAGAAGAACCATCTGGTAATGCTGTTGGTTCTAACATTGTTGTTAAAGTTGAGATTGATACTGTTGACTCAGCATCACCATATATGTTTAACCTTTCACTAAGATCAGTGTGGGGTATGAACGGTATGCATGCTGATGGTGCCAAGGCAACTGGATTTAAGTCAATGGTTGTTGCCCAGTATACGGGACTATCATTGCAGAAAGACGACAGAGCATTTGTTAAATATAATGCTACGACAGGAAACTATGATGAGGGAGGACCTGGTGCTCACTTAGATGGTTTTGCTGAATATAAAAAAGGATGGCGACATACTCACGTTATGTGCAGTAATGACTCATTCATTCAGGTCGTTTCGGTGTTCGCTGTGGGATACGCAGATCACTTTGCTGGATTCCAAGGTGCTGACATGTCTATTACTAACAGTAATAGTAACTTTGGTAATACTGCATTGAGATCAAAAGGATTTAAGAGAGCAGCATTCACTAAAGATAAAGCAGGCACACTTACACATATCATTCCACCTAAGTCACTTGCTGATGTTGATGAGATCTCAGTCAACTGGACTAACATTGATATTAAGAGAACACTTACAATTAACCCTGCACTTGCTGGTCAGGGTGGTGTACTTGGTTCTAGATTATATCTCTATGGATATACTAACGAGACAGCACCGCCACCGAACAAAGTTCAGGGTTATGTGATTGGTGCTAGACAGGATGGTTTAGGTGCTAACGCAGTACCTGACAAGATTAATTGTTTACTTATTCCTTCACCAGGTTCTGCACCTGAGATTAAAACTGCAGAGATCAACCCATTTGGACCTGATGTATCTGGTACAAGTGCAGGTGGTGATGGATCTCCTATTCAATTTGATAGTAGCACATATACTATCGGTGGTGTCGCTAACACAGTCGGTGGTTGGTATATATCTGTTAATGCTACTGACAATCAAATCTATCAAACTCTAGTTAATAATAGTAGTTCTGGTAACCCACCAGGCACATATGCTAACCTGAACTTTACTCCTACAACGTTCATTAAGCGTGTACCTGACGCTAGAAACCTGACTGACAGAACTTATCGTGTTCGTTATGTCATTCCTAAAGATCAGAACCCACCTCTACCTAGATCACCTATTGCAGGTTTCGTATTACAACCGAACAATACTGACAACACAGACTATAAGTTATCTAAGTGTTATTATATCTACGACATTCAAGAAGTCCAGAAGTTTGAGCGTGGTATAAGTGATGGTATATTCTATCTCACATTATTGTGTGGTAGTATCTCACCAACAACATCAAACTTTGACGACATGGCATTCTCTCAGAATGTTAATGAAGTTTATCCTGCATTTGACAGAGACAATCCAAACGCAGACCCTGCAGCATCTGTATCTGTTGCTGACAATGAAACAATCGGTCTAGTATATGGTACTGACGGTGCATCACCTGTACCTGCAAGGGATGATCAAAGAAGTATTACTAAAGAAGCAATTCTATTCTTATTAAATGATACTGGATGGGTCGCTGGATCCTCACCAGGTTGGAATAGTATTAACAATACTCTATCTGGTATTGATTTGACTGCTAGATTAGGTGATGAAGAAACTAGAAAGATTCCTATTCTAGAAGATAGTGCAAACAATGATGCACTGGTTCCTATTAACGTAGAACTGAGACGACACTCCATTCTTAGATCTGGTAACCATACATTTGAATACACTGGTTTCGGACCAGGTAACTATTCAACTGCATTCCCACAGACACAGGTTGAAACTCTATCTGATGAACAGATTAGATTATCACAGTCTCTCAAAGAAGAGGCAGGCGTTGCATTCTACTCTGGACTTAACTCTAACGGTGACCTATTTATTGGTAACCAAGTTATCAACCCTGTTACTGGTCAGATCACATCTGAAGATATTGCACAGTTAAATGTATTAGGTGAAGAGAATACTACCATTGAAACATTCTCTGAAGTTGTTATTACTGACAAACTAACTGTTATCGGTGGTGCAAGTAACAACTTAGAATCTATCTTCTCAGGTCCTGCTACATTCCAAGGCACTATTACTTCTCAGAAAGATATTCTTGCTAAGAAGTTAACATATAACAACCAAGATGGTACGGTTCTTAAATCTACTCTCTTAGCACCTGAATTGAAAACTGGTACTCCCCCAGTTGGTCAAGGTACACCTGATTTAAGTGCAGTATTGAACTACAATGCTCCTAGTGATGGTGACATTGTATATAATATTGACTGGGAACCTGGTAAAAACCTAGGTTGGATGTACTATGAATCTGTATGGTACAAGTTTGGACTAACTAACACCGATGTATTCCAATTTGGAGAGTATGATTCATCCTACCCTCAACATATTGGTTTAGGTAGAGCGCCATCGTCCACATATAGATTAGAAGTAGAGGGATCGCAGCGTATTACTGGTGACCTTCGTGTTGATGGTCGTGGTGGTGTTGCTCCTGATAAATATATTACTAGACGTACTCAGGGTGATGGTTCTACCCTGAACTATCAGATTACATCATACGCTGGTGTTGTACACAATTCTAAGTCGGTGATTGTTACTATCAATGGTGTATTACAGCATCCTGATGTTAACTATACTGTTGATTCAAACGGTACTAACGTAGTGTTCGCATCTGGCGATGCTCCTACATCAAATGATTTTGTTGAAATTAGAGAACTACCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c3a492bf0e50c287127b25241ffe0dc4a666df17db81efc0146362dfc9d88e44
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3454
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50