Protein

View in Explore
Genbank accession
YP_009285936.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MPSDLCILVQRHPLSAEMETVHQPAGQTVAAIVAGLDLRPELGRPFVTLGRGVEVSEVVPEMWARCRPAPGVIVEVRYRLSGPAVGPLIAAMSGWVATSVFGLAAGTFAATMVAAGVSVLAGLAINALIPPAKTPSAASREVSPLYTITGAQNRATVYDVVPKVLGRHRLYPPLSAAGYTTMDGEREAVYHGRFCLGYGPLAISDLRIGETPITSFEDVEIELLNVDQTVTTALDADLAGQIGAWRTGTEQMTLYPRDMVQTYYNVEVAEDDSVTRTTATDCTRAVVMIGFPQGLIADDDDGDVEQRQVTLQVDYRATGDTNWTLHRQWNELRKTRDPFVLTEEIAFAARGQFDIRLSVSNKITIGGGSDFHSDTVTLESILSWQDRDGEELPSHDGIAEIAVRIRATDQLSGNIDTLNCLVHQLAPVWDGSAWSASLQTVRHPAWVYLDAIRGNHLDVAVPDGKIDLAAFKAWADDEPGWTCDYVVDTDLRLADVLDIIAAAGRAKRSLADLKYSIIRDRAADEARIVFTPRNSWGFQGEIAFPQEIHAWRVQVMSEPAGWQMDELIVYAPGHSAATATRFETLELPAVVLTAEDTDEGNPWRLARYHIAQAILRPERFTWQCDWECLRVQRGDPVLFVHDVPLVGVGAARILSVDADGPALTGLRLDEDFGVSGNHRITVRPANGGAVIAFTASGAGQDWAYVSGDVEASALAVGDLVLVEDTATETMKLLVSSVQPAPDETARITAVPAAPEVLDADAGPIPLYNPHITLPTALKPDAAQVPDAPVVLDVYSDARSQVYVTGGAYYARIAVVVERPAPSGVAPAAYRMRWKNVTRGDDWTTGEDQPVPLTRMVSGRVEALETYSVEVQAVSARGRVSAWTSAGQVVAYAATAMEITPADVEAAFLATIQAAYDNHYLALTNAVGVVGALRDLVAADDTTPGSIAYAVGNAKDELTAAIDAVQAQVDDLLAIEDWDAATTYEIGEQVTWQGVLYVATAQSTNVEPPNASYWDALGNYTSLGDAVAGNSADITSLQVAKADKTEVVGIVATEIAAQSTYADIGELTAQVAASDYALTDPSGSVATSLTALKAEIENPAGTSVGALVADIQADYITTTDLTSAMAASALSLTARINLGTNLVSTGTFVDDAGAEFMGDWRTNGLGSSIFTPNDASVYGNAMICNGRLTYDGDPRSGTSLGGRKIRITGKVYAGLSPYEVRVGLNVKDEDGTDQWPQGVVAEAYQAGWNAFDVVVTIPDGTIQWRPMLLSLGDTYATDHNVRFAELVFEDISEAQSVASDMTASIDALNTAITGPGGAIASATSDLKAEIEDPAGTSIGADLAQNYYTSAAADAAIASAGTSLKAEIEDPNGSSVGAEVSVLQTAVSDIEGHAASMVSFRALAGNAVSLLDLVASSDPEQSFSVVRISADDILIDGTVSMSKLVIADFGNMIPGNNLLDEGLWYISGPAQFIDAGSYETASRMIDVYVPTAEIGGTPSGEYASAWTAPFAVAPNTYYAVGGDGRYWASAVGEARVYVYFYDSASAATDAYLSFQTIHSFTVGGLSSEQRFTEIVQTPSDATHMRIRWRVGRDAGGDIYGRFEAYNLFARPATDDRLIVDGAVTAEKISVLSLDAISADLGSIEVGTANIADAAITSAKIASAIQSTNFVSGATGWQIALDGTAEFNRLIARQSLEVGALTDRWETLLAAETDFEESFVGTYLSLNASVAAASLEGRLFFAMGAIDVRHYDGTIDPANAPVLSIQSRVKLGGTWGDWEGGGAMPSMAETYADAASVTSAPWRTIARAQAVFGVWDEVDFRWHIDRPSGEANLVVRNAFLSVIEVVPT
Physico‐chemical
properties
protein length:1845 AA
molecular weight: 196009,60410 Da
isoelectric point:4,37992
aromaticity:0,07805
hydropathy:0,03469

Domains

Domains [InterPro]
DC_0118
STR
1–596
DC_0118 DC_0087
IPR055385
ATT
261–386
IPR055385 Coil IPR015406
G3DSA:2.10.10.20
ATT
958–1024
G3DSA:2.10.10.20
IPR036573
STR
972–1017
IPR036573
YP_009285936.1
1 1845
Architecture
STR
ATT
STR
STR
ATT
STR
STR 1-260 | ATT 261-386 | STR 387-596 | STR 840-957 | ATT 958-1024 | STR 1025-1838 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhodovulum phage vB_RhkS_P1
[NCBI] 		1873452 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhodovulum sp. P5
[NCBI] 		1564506 Pseudomonadota > Alphaproteobacteria > Rhodobacterales > Paracoccaceae > Rhodovulum >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009285936.1 [NCBI]
Genbank nucleotide accession
NC_031059.1 [NCBI]
CDS location
range 28428 -> 33965
strand +
CDS
GTGCCCTCTGATCTTTGCATCCTCGTGCAGCGCCACCCGCTGTCGGCGGAGATGGAGACCGTGCACCAGCCCGCCGGGCAGACCGTGGCCGCGATCGTCGCCGGGCTCGACCTGCGGCCCGAGCTGGGCCGGCCGTTCGTGACACTGGGCCGCGGGGTCGAGGTCAGCGAGGTCGTGCCCGAGATGTGGGCCCGCTGCCGCCCCGCGCCGGGTGTGATCGTCGAGGTGCGCTATCGCCTGTCCGGTCCGGCGGTGGGCCCGCTGATCGCGGCGATGAGCGGCTGGGTTGCCACCTCGGTCTTCGGGCTGGCGGCGGGCACATTCGCGGCAACGATGGTGGCCGCCGGCGTGTCGGTGCTGGCCGGGCTGGCCATCAATGCGCTGATCCCGCCGGCGAAGACACCCTCGGCCGCGTCGCGAGAGGTATCGCCGCTTTACACGATCACCGGCGCCCAGAACCGCGCGACGGTCTACGACGTGGTGCCCAAGGTGCTGGGCCGGCACCGGCTTTACCCCCCGCTCTCGGCGGCGGGCTACACCACGATGGACGGCGAACGGGAGGCGGTCTATCACGGGCGCTTCTGCCTGGGCTACGGGCCGCTGGCGATTTCCGATCTGCGGATCGGGGAAACCCCCATCACCAGTTTTGAAGACGTCGAGATCGAGCTGCTGAACGTCGACCAGACGGTCACGACGGCGCTGGATGCCGATCTGGCCGGGCAGATCGGCGCATGGCGCACCGGGACCGAGCAGATGACGCTCTACCCGCGCGACATGGTGCAGACCTACTACAACGTCGAAGTGGCCGAAGACGACAGCGTCACGCGCACGACGGCCACGGACTGCACGCGTGCGGTGGTGATGATCGGCTTCCCGCAGGGCCTGATCGCGGATGACGACGACGGCGACGTCGAGCAGCGGCAGGTCACGCTGCAGGTGGACTATCGCGCGACCGGCGACACGAACTGGACGCTGCATCGGCAATGGAACGAACTCCGCAAGACCCGGGATCCGTTCGTGCTGACCGAGGAAATCGCCTTTGCCGCGCGGGGGCAGTTCGACATCCGCCTGTCGGTGTCGAACAAGATCACGATTGGCGGCGGCTCGGATTTCCACTCCGACACGGTGACGCTGGAAAGCATCCTGTCCTGGCAGGATCGCGACGGCGAGGAACTGCCCAGCCATGACGGCATCGCCGAGATCGCCGTGCGGATCCGCGCAACGGACCAGTTGAGCGGCAATATCGACACGCTGAACTGCCTCGTCCACCAGCTGGCGCCGGTCTGGGATGGCTCGGCCTGGTCGGCGAGCTTGCAGACGGTGCGCCACCCGGCCTGGGTGTATCTGGACGCGATCCGCGGCAACCATCTCGATGTCGCGGTGCCGGACGGCAAGATCGATCTGGCCGCCTTCAAGGCGTGGGCGGATGACGAGCCGGGATGGACCTGCGACTACGTGGTCGATACCGACCTGCGGCTGGCCGACGTGCTCGACATCATTGCCGCGGCCGGGCGCGCCAAGCGGTCGCTGGCCGACCTGAAATACTCCATCATCCGGGACCGCGCCGCCGACGAGGCACGCATCGTCTTCACGCCGCGCAATTCATGGGGCTTCCAGGGCGAGATCGCCTTTCCGCAGGAGATCCACGCCTGGCGCGTGCAGGTGATGTCGGAACCGGCCGGCTGGCAGATGGACGAACTGATCGTCTATGCCCCCGGCCACAGCGCGGCGACGGCCACGCGGTTCGAGACGCTGGAACTGCCGGCTGTCGTGCTGACCGCCGAGGACACGGACGAGGGCAATCCGTGGCGGCTGGCCCGCTATCATATCGCCCAGGCGATCCTGCGGCCGGAGCGGTTCACGTGGCAGTGCGACTGGGAGTGCCTGCGGGTGCAGCGTGGCGATCCGGTGCTTTTCGTGCACGACGTGCCGCTGGTGGGCGTGGGCGCCGCGCGCATCCTGAGCGTCGACGCCGACGGGCCGGCACTGACCGGGCTGCGGCTGGACGAGGATTTCGGGGTTTCGGGCAATCACCGGATCACCGTGCGCCCCGCCAATGGCGGTGCCGTCATCGCGTTCACCGCCAGCGGCGCGGGGCAGGACTGGGCGTATGTCTCGGGTGACGTGGAGGCGAGCGCACTGGCCGTGGGCGATCTCGTTCTTGTCGAGGATACCGCGACCGAAACCATGAAACTGCTGGTCAGCAGCGTGCAGCCCGCGCCGGACGAGACCGCAAGGATCACGGCCGTGCCCGCGGCGCCGGAAGTGCTGGACGCGGATGCAGGCCCGATCCCGCTTTACAATCCGCATATCACCCTGCCGACGGCGCTGAAGCCCGATGCCGCGCAGGTGCCCGACGCGCCCGTGGTGCTGGACGTCTACTCCGATGCACGCAGCCAGGTCTACGTGACCGGAGGCGCCTATTACGCGCGCATCGCCGTGGTGGTCGAACGCCCCGCCCCGTCGGGCGTGGCGCCGGCGGCCTATCGCATGCGCTGGAAGAACGTCACCCGCGGCGACGACTGGACCACCGGTGAAGATCAGCCCGTGCCGCTGACGCGGATGGTGTCGGGCCGGGTGGAAGCGCTTGAGACCTACAGCGTCGAGGTGCAGGCCGTCTCGGCACGCGGCCGGGTCAGCGCCTGGACCTCCGCCGGCCAGGTCGTGGCCTACGCGGCGACCGCGATGGAGATTACGCCCGCCGATGTGGAGGCGGCGTTTCTGGCGACGATCCAGGCGGCCTATGACAACCACTATCTCGCGCTGACCAATGCGGTCGGCGTGGTCGGCGCCCTGCGCGACCTGGTGGCCGCGGACGACACGACGCCGGGGTCCATCGCCTATGCTGTCGGCAATGCCAAAGACGAGCTGACCGCGGCGATCGACGCGGTGCAGGCGCAGGTTGACGACCTGCTGGCGATCGAGGACTGGGACGCGGCCACCACCTACGAGATCGGCGAGCAGGTGACCTGGCAGGGCGTCCTTTACGTTGCCACGGCGCAGTCGACCAATGTCGAGCCGCCGAACGCGAGCTACTGGGACGCGCTTGGGAACTACACCTCGCTCGGCGACGCTGTGGCGGGCAACTCCGCTGACATCACCTCTCTTCAGGTTGCGAAAGCAGACAAGACAGAGGTCGTGGGTATCGTTGCGACCGAGATCGCGGCGCAATCCACCTATGCCGATATCGGCGAACTGACGGCACAGGTCGCGGCATCCGACTACGCGCTGACGGACCCGTCCGGGTCGGTTGCCACATCCCTGACCGCGCTGAAGGCGGAGATCGAAAATCCGGCCGGCACAAGCGTCGGAGCGCTCGTGGCCGACATCCAGGCGGACTATATCACGACGACCGACCTGACGAGCGCCATGGCCGCGTCGGCCCTGTCTCTCACGGCGCGGATCAATCTCGGTACAAATCTGGTGTCGACAGGAACTTTCGTGGATGACGCAGGCGCTGAGTTCATGGGCGACTGGCGCACGAACGGTCTTGGAAGCAGCATCTTCACGCCGAACGATGCGAGCGTCTACGGAAACGCGATGATCTGCAACGGTCGCCTCACCTATGACGGCGACCCGCGTTCGGGCACGAGCCTTGGTGGCCGCAAGATCAGGATCACCGGCAAGGTCTATGCTGGCCTCAGCCCTTACGAGGTGCGTGTCGGCCTCAACGTCAAGGACGAGGATGGCACGGATCAGTGGCCTCAAGGCGTGGTCGCGGAGGCGTATCAGGCTGGCTGGAACGCGTTCGATGTCGTCGTGACGATCCCGGACGGAACGATCCAGTGGCGACCAATGCTGCTGTCTCTTGGCGATACCTATGCCACCGACCACAATGTCAGGTTCGCCGAGCTTGTGTTCGAGGACATCTCCGAGGCGCAGTCGGTCGCGTCAGACATGACGGCCTCCATCGATGCGCTCAATACGGCGATCACCGGGCCTGGTGGCGCAATCGCGTCCGCAACAAGCGATCTGAAAGCGGAGATCGAGGACCCGGCCGGCACGAGTATTGGGGCCGATCTGGCACAGAACTACTACACCTCCGCCGCGGCAGATGCAGCCATCGCCTCCGCCGGCACATCGCTGAAGGCAGAGATCGAAGATCCGAACGGAAGCAGCGTCGGGGCCGAGGTGTCTGTTCTGCAAACTGCCGTGTCCGACATCGAGGGGCACGCCGCGTCGATGGTCAGTTTCCGGGCGCTGGCCGGCAATGCGGTGTCCTTGCTGGACCTCGTCGCCAGCAGCGATCCGGAGCAATCGTTCTCGGTGGTCCGGATCTCGGCCGACGACATCCTGATCGACGGCACCGTCAGCATGTCGAAGCTGGTGATCGCGGACTTCGGGAACATGATCCCCGGCAACAACCTGCTGGATGAGGGGCTGTGGTACATCTCGGGCCCGGCCCAGTTCATCGATGCCGGCAGCTATGAAACCGCCAGCCGGATGATCGACGTCTACGTGCCAACGGCCGAAATCGGCGGCACGCCGTCGGGCGAATACGCGTCGGCCTGGACAGCGCCCTTCGCGGTCGCGCCCAACACCTACTATGCCGTGGGTGGCGATGGCCGGTATTGGGCCAGCGCCGTGGGCGAGGCCCGGGTCTACGTCTATTTCTACGACAGTGCGAGCGCGGCCACGGACGCGTACCTGTCGTTCCAGACGATCCACAGCTTCACCGTCGGCGGTCTGTCGTCGGAGCAACGCTTTACCGAGATCGTGCAGACCCCGTCCGATGCCACGCATATGCGCATCCGGTGGCGCGTGGGCCGCGATGCCGGCGGCGACATCTACGGCCGGTTCGAAGCCTACAACCTGTTTGCGCGGCCCGCGACCGACGACCGGCTGATCGTGGACGGCGCCGTCACGGCCGAGAAGATCTCCGTCCTCTCTCTCGACGCGATCTCGGCCGATCTTGGCAGTATCGAGGTCGGGACCGCCAACATCGCCGACGCCGCGATCACATCCGCCAAGATCGCCAGCGCGATCCAGTCGACGAATTTCGTATCCGGCGCGACCGGCTGGCAGATCGCCCTGGACGGGACCGCCGAATTCAACCGCCTGATCGCCCGCCAGTCTCTCGAAGTCGGCGCGCTGACCGATCGGTGGGAGACGCTACTCGCGGCAGAAACCGACTTCGAGGAATCGTTTGTCGGAACCTACCTGTCGCTCAACGCTTCTGTCGCGGCGGCATCGCTTGAGGGGCGTCTGTTCTTCGCGATGGGGGCCATCGACGTGCGCCATTACGACGGGACAATCGACCCGGCCAACGCCCCGGTCCTGTCCATCCAGTCACGGGTCAAGCTCGGCGGCACCTGGGGCGACTGGGAAGGTGGGGGCGCCATGCCGTCGATGGCCGAGACCTACGCCGACGCCGCATCGGTGACCTCGGCCCCGTGGCGGACCATTGCCCGTGCGCAGGCCGTCTTCGGGGTGTGGGACGAGGTCGATTTCCGCTGGCACATCGACCGCCCGAGCGGCGAGGCAAACCTCGTCGTCCGCAATGCCTTCCTGTCCGTGATCGAGGTTGTTCCGACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
bd372ea52356a8f1480036168856a7c1bb036048e267c0a9d26e60aaa0193765
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,5965
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of a marine inducible prophage vB_RhkS_P1 induced from Rhodovulum sp. JLT5 in shallow-sea hydrothermal systems Lin,D. 2016-12 — GenBank