Protein

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Genbank accession
YP_010843860.1 [GenBank]
Protein name
tail fiber protein; host specificity
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,50
Protein sequence
MSQLIGRSREVVIDLAANHNYNKDNLINWMRQQGNAPVVINVRGDMVSYSAGVPLFEFPGDLANEYVQLSIHGVTISGRGGHGAGQQNNMTAQPGGACIRNFIGTRLRINNDGTIMGGGGGGGCVFHSASMQTVSGGGGGRPFGEGGQRYYTVGMQYGGSSASLVTPGDPGAVFESAGRSGRGGGGGDMENYVDPGGNAWGNLVGYSNTPGAPGGAALEGDRADWQVLGNVYGNFD
Physico‐chemical
properties
protein length:236 AA
molecular weight: 24207,35000 Da
isoelectric point:5,50596
aromaticity:0,08051
hydropathy:-0,33559

Domains

Domains [InterPro]
DC_1679
STR
1–178
DC_1679
IPR007932
RBD
10–234
IPR007932
YP_010843860.1
1 236
Architecture
STR
RBD
STR 1-178 | RBD 179-234 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage KM16
[NCBI] 		2797303 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella paratyphi
[NCBI] 		54388 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010843860.1 [NCBI]
Genbank nucleotide accession
NC_070779.1 [NCBI]
CDS location
range 1198 -> 1908
strand +
CDS
ATGTCACAACTGATAGGCCGATCGAGAGAAGTTGTTATTGATTTAGCAGCTAACCACAATTATAATAAAGATAACCTCATTAATTGGATGCGTCAACAAGGCAATGCTCCGGTTGTAATTAATGTTCGTGGTGATATGGTTTCATATTCAGCTGGTGTTCCTTTATTTGAATTCCCAGGAGATCTGGCTAATGAATATGTTCAGTTGAGTATTCATGGAGTAACAATTTCCGGGCGAGGTGGCCATGGGGCAGGTCAACAAAATAACATGACGGCTCAGCCGGGCGGGGCATGTATTCGCAACTTTATTGGTACACGATTAAGAATTAATAATGACGGTACAATCATGGGCGGTGGCGGTGGCGGCGGGTGTGTATTCCATTCAGCTTCTATGCAAACCGTATCTGGTGGTGGTGGTGGTCGACCATTTGGTGAAGGTGGGCAACGATACTATACTGTTGGGATGCAATATGGCGGTAGTAGTGCTTCTTTAGTTACTCCTGGTGATCCTGGTGCCGTATTTGAATCCGCCGGGCGTTCTGGCCGAGGTGGTGGTGGTGGAGATATGGAAAATTATGTTGACCCGGGTGGTAATGCATGGGGCAACTTAGTAGGATATTCTAATACACCTGGCGCACCCGGCGGTGCCGCTTTAGAAGGAGATCGCGCTGACTGGCAAGTATTAGGAAATGTGTATGGCAATTTTGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4bcdf4205cab981ffda0e2cec7c4aedbe0118e93c1b22eaafd595e2b83a7a53c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8047
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, Characterization, and Application of Salmonella paratyphi phage KM16 Against Salmonella paratyphi Biofilm Jiang,L. 2021-03-16 — GenBank