Protein

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Genbank accession
XXK85817.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSGCGDVLSLADLQTAKKHQIFEAEVITGKSGGVTGGADIDYATNPVTGQTQKTLPAVLRDAGFSPVSWDFSSGGTLTVNDRDKVVYDPVSKTWYSYAGTLPVTVPASFNPVGNANWRPQTDPNLRGELSIIENIAELMSKTPNPELTYTVKGYAPGTTFGGGIFYWDATLPKSQHNGITVFSPTVPWDGTYTTLATFLAGTGETTPSGSGCWVRMQNSRDMLVSWGGVDITGTNVADAAVTAVIKYANTVKRSVRFDSGANIKWGFSTLVQHFDKFNLNVQCSVVLENISGIKVYAENDVEFNTDHPTYAERVVFRLKNCSEVEFSGFNFNSNFTDYSTTTSDTTYKPQEWWQGFTAEGCSNLEITKHHVNACQVFVRADCTNLAANLHNIDIHVTDNMFKYVTNYCVISRNINLVEFSRNKVSFNGRNWHTFGEAFAPTTGSLNIIAKDNIFTNQIAQQSCITATLGASSVTIQGNYCRRHYGIFVELGSSSNVLISGNASISTGERADTTHILLVGAVDGNPAGGLSNVNITANYFQGGGFAIQEYNTGNALRTGFSITNNHMIDCKLPAITNQSYIGVVVRGNYMEAPTNFPDLAIAGQRPVIDGNMFVGVRVRARDLGYSVIAPKVTNNVWRANSLGESYPALIDYTEFTALVADGNDSTAAAYTDFIVHPSNCTNAGFRRVGPTEGFSVSPSARFGAKLTDAHVGDFVANSSPTASGTYAWVCVNQTTKTFSSIALSA
Physico‐chemical
properties
protein length:745 AA
molecular weight: 80394,64880 Da
isoelectric point:5,72257
aromaticity:0,10470
hydropathy:-0,14671

Domains

Domains [InterPro]
DC_1559
ATT
39–149
DC_1559 DC_0317
G3DSA:2.10.10.80
ATT
65–132
G3DSA:2.10.10.80 IPR059934 IPR011050
XXK85817.1
1 745
Architecture
ATT
RBD
STR
ATT 39-149 | RBD 150-215 | STR 216-745
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XXK85817.1
1 745
Domain Start End Length (AA) Confidence
N-terminal 1 236 236 0,9934
Central domain 237 690 455 0,9920
C-terminal 691 745 54 0,9714
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-236
Central
237-690
C-terminal
691-745

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Ivi
[NCBI] 		3446501 No lineage information
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XXK85817.1 [NCBI]
Genbank nucleotide accession
PV841871.1 [NCBI]
CDS location
range 28089 -> 30326
strand +
CDS
ATGTCAAGCGGATGCGGTGACGTTTTAAGCTTGGCGGATTTACAAACCGCCAAAAAACACCAGATTTTCGAAGCCGAGGTTATCACCGGTAAATCCGGCGGCGTAACCGGTGGTGCGGATATCGATTATGCGACTAACCCGGTTACTGGGCAGACACAGAAGACGTTACCCGCCGTGTTGCGTGATGCTGGTTTTTCTCCTGTATCGTGGGATTTCTCCTCTGGCGGTACGTTAACAGTTAATGACCGCGACAAAGTGGTGTACGACCCTGTAAGTAAAACGTGGTACTCGTACGCGGGGACGTTACCAGTTACAGTTCCCGCGAGTTTTAATCCCGTAGGTAACGCTAACTGGAGGCCACAGACCGATCCTAATTTACGTGGTGAGTTATCCATCATTGAAAACATAGCTGAGCTTATGTCTAAAACGCCAAACCCAGAACTCACGTACACCGTGAAAGGCTATGCCCCCGGTACGACTTTCGGCGGGGGCATTTTCTACTGGGACGCCACCCTCCCTAAGTCACAACACAACGGCATCACTGTATTTAGTCCAACGGTGCCATGGGACGGAACCTACACCACTCTCGCGACCTTCTTAGCTGGCACAGGGGAAACCACCCCATCCGGCAGCGGATGCTGGGTCCGTATGCAGAACAGCCGCGACATGCTCGTTTCTTGGGGCGGCGTTGACATCACAGGGACGAACGTTGCGGACGCCGCTGTAACCGCTGTTATTAAGTATGCTAATACGGTCAAGCGTTCTGTTAGATTTGACTCTGGTGCAAATATTAAATGGGGCTTCTCTACCCTTGTCCAGCACTTTGACAAGTTCAATCTTAATGTGCAATGTTCTGTTGTTCTGGAGAATATCAGCGGGATTAAGGTTTACGCGGAGAATGACGTTGAGTTCAACACTGACCACCCTACTTATGCGGAGCGTGTTGTCTTTCGCCTTAAAAACTGTAGCGAAGTGGAATTCTCTGGATTCAACTTCAACTCCAATTTCACCGACTATTCGACGACGACATCGGACACTACGTACAAGCCCCAAGAATGGTGGCAGGGCTTCACAGCCGAAGGTTGTTCTAATCTAGAAATCACTAAGCATCACGTTAATGCGTGCCAAGTATTTGTAAGGGCTGATTGTACAAACTTAGCAGCAAACCTTCATAACATAGATATTCATGTTACAGATAACATGTTTAAGTATGTAACGAATTACTGCGTTATTTCCAGAAACATAAATCTGGTTGAATTCAGCCGCAACAAGGTTTCATTTAATGGGCGTAACTGGCACACATTCGGAGAGGCGTTCGCCCCTACGACAGGCTCCCTTAATATAATTGCCAAAGATAACATTTTTACTAACCAAATTGCGCAGCAGTCGTGTATTACGGCAACTCTGGGCGCTTCATCTGTAACTATTCAAGGTAATTATTGCCGTCGACATTATGGTATTTTTGTCGAACTCGGTAGTTCGAGCAATGTGTTAATTTCAGGTAACGCATCGATAAGTACCGGTGAGCGCGCTGATACAACACACATTCTTTTGGTTGGGGCGGTAGATGGCAATCCGGCAGGTGGGCTTTCAAACGTAAACATTACCGCAAACTATTTTCAAGGCGGTGGTTTTGCCATTCAAGAATACAATACCGGAAACGCATTGCGCACTGGGTTCAGTATAACTAATAATCATATGATTGACTGCAAATTACCAGCCATCACTAACCAATCTTACATTGGTGTTGTAGTTCGCGGTAACTATATGGAAGCACCCACTAACTTTCCTGATTTAGCTATCGCAGGACAGAGGCCTGTTATAGACGGTAACATGTTTGTTGGTGTTAGGGTGCGTGCAAGAGATTTAGGGTATAGCGTAATAGCTCCTAAGGTAACCAACAATGTATGGAGAGCAAACTCCCTGGGGGAATCATATCCAGCACTTATCGACTATACCGAATTCACCGCATTAGTGGCGGATGGCAACGACTCAACAGCAGCGGCGTACACGGACTTCATTGTCCACCCTTCAAATTGTACTAATGCAGGGTTCCGTAGGGTAGGCCCAACTGAAGGTTTTAGCGTCAGCCCTTCCGCTCGTTTCGGCGCTAAATTGACGGACGCGCATGTGGGCGATTTTGTGGCTAATTCATCTCCTACGGCATCGGGTACTTATGCGTGGGTATGCGTTAATCAAACAACAAAAACATTCAGTTCTATCGCATTGAGTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5f83444c98ecbfa01e0186d6d5937c32ffe4a8b98971633dc398ddfef780b5b1
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9160
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of lytic bacteriophages against environmental Escherichia coli isolates and their phage resistance trade-off Soukou,V., Dioli,C., Zrelovs,N., Tseperka,M., Dioli,C., Svanberga,K., Perra,M., Freri,M., Kazaks,A., Vogiatzaki,C., Skliros,D. and Flemetakis,E. 2010-06-04 — GenBank