Protein

View in Explore
Genbank accession
XOD48428.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,88
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MNSRVDKFDQIVTSIDTWVKGDSASTVDFGGGPVDSPAKLIEDQRTAISAAAVALISQKDEQINQQANGVLAQANAAASNANGSAGAAAASAASAAASASDSAASAADAAASSAQKFVTSAGAANQKPNTSYTYINPLARVCTITGGGDGSNFQMIGYGHNRQKFLGAATTGVWNFLPANGIANLSLYKKAGDGTRTKLTYTSGTPTGNQWTGTVGASSVSWTLGTALGVLEQLYIEDPYAVIATNGTQPDYSWIGGGYDNVVDRGVMQHVTGAHNRVLDGDHTTMLGGSYHINDGGSYNAFCGGTDNWNGSGATLGSGHFGGLRNYCNGATSGTTFAQSCKVNSAYSWTHGYGNTANGTAVSIGGRNNTASGSDSAVFGNGNTSTANYSFAIGNGNTVGHHYARSLGGYKGSTLYQGELLVWAYRDTSVGTNPFVSRRQVPLSAVTSTVSSSYLATLDNITGITLPASTAWKCTLEVWARSTALRSAAWELKFRAHTDASGNLTIGTVTTVWSDVDANFGTGANVATVSVAVSSNQLNFVIQPRIDSPVGAKWGAVLHINEVN
Physico‐chemical
properties
protein length:564 AA
molecular weight: 58020,83810 Da
isoelectric point:6,40305
aromaticity:0,08511
hydropathy:-0,17199

Domains

Domains [InterPro]
DC_0261
STR
1–320
DC_0261 IPR011049
IPR011049
STR
314–431
IPR011049
DC_0296
RBD
429–564
DC_0296
XOD48428.1
1 564
Architecture
STR
RBD
STR 1-431 | RBD 432-564
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD48428.1
1 564
Domain Start End Length (AA) Confidence
N-terminal 1 137 137 0,8821
Central domain 138 400 264 0,7837
C-terminal 401 564 163 0,9809
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-137
Central
138-400
C-terminal
401-564

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage YL1
[NCBI] 		3390401 No lineage information
Host Ralstonia pseudosolanacearum
[NCBI] 		1310165 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD48428.1 [NCBI]
Genbank nucleotide accession
PQ295876.1 [NCBI]
CDS location
range 49848 -> 51542
strand +
CDS
TTGAACAGCCGCGTCGACAAGTTCGACCAGATCGTCACCAGCATCGACACGTGGGTGAAGGGTGACAGCGCATCCACCGTCGATTTCGGCGGCGGTCCGGTCGACTCGCCTGCCAAGCTCATCGAGGATCAGCGAACCGCAATCTCTGCGGCGGCGGTCGCGCTGATCTCGCAGAAGGACGAGCAGATCAACCAGCAGGCGAACGGCGTGCTGGCGCAGGCGAACGCGGCGGCCAGTAATGCCAACGGCAGTGCGGGCGCGGCGGCGGCTAGCGCAGCGAGTGCGGCGGCATCGGCGTCCGACAGCGCTGCGAGCGCGGCTGACGCCGCTGCGTCGTCGGCCCAGAAGTTCGTGACGTCGGCCGGTGCGGCGAACCAGAAGCCGAACACGTCCTACACCTACATCAACCCGCTGGCACGCGTGTGCACGATCACCGGCGGCGGCGACGGCTCGAACTTCCAGATGATCGGGTACGGCCACAACCGCCAGAAGTTTCTGGGCGCGGCCACCACTGGCGTCTGGAACTTCCTGCCGGCCAACGGCATCGCCAACCTTTCTTTATACAAGAAGGCTGGGGATGGCACCCGCACAAAGCTGACGTACACATCCGGCACTCCGACCGGCAACCAGTGGACAGGCACTGTTGGCGCAAGCAGCGTCTCCTGGACGCTCGGCACAGCCCTTGGCGTGTTGGAGCAGCTGTACATCGAAGACCCGTACGCGGTGATTGCGACGAATGGCACGCAGCCTGACTATTCCTGGATCGGCGGCGGCTACGACAATGTGGTGGATAGGGGGGTGATGCAGCACGTCACGGGCGCGCACAACCGTGTCCTGGATGGCGACCACACCACGATGCTGGGCGGAAGCTACCACATCAACGACGGAGGAAGCTACAACGCATTCTGCGGTGGCACCGACAACTGGAATGGATCGGGCGCTACGCTGGGCAGCGGGCACTTCGGCGGGCTGCGCAACTATTGCAACGGCGCCACCTCTGGCACGACGTTCGCGCAGTCCTGCAAGGTGAACTCTGCGTACAGCTGGACGCACGGCTACGGGAATACTGCCAATGGCACCGCCGTCTCCATCGGCGGGCGAAACAACACCGCATCCGGGTCGGACTCGGCCGTCTTCGGCAACGGCAACACCAGCACCGCGAACTACTCGTTCGCCATCGGCAACGGCAACACGGTCGGCCATCACTACGCCCGCAGCCTGGGCGGGTACAAGGGCAGCACGCTGTATCAGGGTGAGCTGCTGGTCTGGGCGTACCGCGACACGTCGGTCGGCACGAACCCGTTCGTTAGCCGCCGGCAGGTTCCGCTGTCCGCAGTGACCTCTACTGTCAGCTCGTCCTACCTCGCCACGCTCGACAACATTACTGGCATCACGCTTCCAGCCAGCACGGCATGGAAATGCACCCTGGAGGTATGGGCGCGCAGCACGGCGCTGAGGTCAGCGGCCTGGGAGCTGAAATTCCGAGCGCACACAGATGCCTCCGGCAACTTGACGATCGGCACTGTGACCACGGTGTGGTCCGACGTTGATGCGAACTTCGGCACGGGCGCCAACGTAGCGACGGTTTCTGTCGCGGTATCGAGCAATCAGCTCAATTTCGTGATCCAGCCACGGATCGATTCTCCTGTCGGCGCAAAGTGGGGTGCCGTGTTGCACATCAACGAGGTGAACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f914e718ced2c805e13e0a120320c5736c676a3c542b6a3ddbcedc9b8d79f515
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7340
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Development of a Virulent Phage Cocktail Formula and Evaluation for Control of Tobacco Bacterial Wilt Disease He,H. 2025-03-13 — GenBank