Protein

View in Explore
Genbank accession
QIG70224.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MALAAQKIIVRIGMSEEVPGMDPGEMGWDMDLARLRVGDGSPNPTYVMTNKSKGPFEYNFIQYAQYPEIRMLPEGTVDGVDISDLNRENGLVTRIGDNLWAHRTIVNTDGYVEVTFGDGVAGNPTINFSHDFTVEIGEFLKTVAVDDITIHGNGTVVAPLYAQIATFTLRGVIRIATLAEVNAGVDTTTAVCPAYLKNYVTNNSKKFGAILKTGTIYTFPHLQDSGSLSLAGYTCAVVVVSGGGDIIDGGTIRLRIGNVTFAPPSQFLGDNPAVSSFSAGSGGSFSGASQFAMFKSGGVWYATFNGVAFVVGSGDSFTWGKDDGTQGSVAAGTPVGF
Physico‐chemical
properties
protein length:337 AA
molecular weight: 35506,50700 Da
isoelectric point:4,74972
aromaticity:0,10089
hydropathy:0,07923

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG70224.1
1 337
Domain Start End Length (AA) Confidence
N-terminal 1 67 67 0,9456
Central domain 68 266 200 0,1121
C-terminal 267 337 70 0,9866
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-67
Central
68-266
C-terminal
267-337

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_N28_1
[NCBI] 		2509583 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG70224.1 [NCBI]
Genbank nucleotide accession
MN988515 [NCBI]
CDS location
range 59270 -> 60283
strand -
CDS
ATGGCACTAGCGGCACAAAAGATCATCGTTCGGATTGGTATGTCGGAAGAAGTTCCCGGCATGGACCCCGGCGAAATGGGTTGGGATATGGACCTTGCACGCTTGCGCGTTGGCGATGGCTCCCCCAATCCTACCTACGTCATGACGAACAAGTCGAAAGGCCCGTTCGAATACAACTTCATCCAGTATGCGCAGTATCCGGAAATCCGGATGCTACCAGAGGGCACGGTCGATGGCGTCGATATCTCCGATCTCAATCGCGAGAACGGGCTGGTAACACGCATCGGTGATAACTTGTGGGCACATCGCACCATCGTCAATACCGATGGCTACGTGGAAGTCACGTTCGGCGATGGTGTCGCTGGTAATCCTACCATCAACTTCTCGCACGATTTCACGGTCGAGATTGGCGAATTTCTTAAGACCGTTGCCGTTGACGATATTACCATCCACGGAAACGGCACGGTGGTCGCGCCGCTGTATGCGCAGATCGCAACGTTCACGCTGCGCGGTGTCATTCGCATTGCTACGTTGGCCGAAGTCAACGCGGGCGTCGATACTACCACGGCAGTCTGCCCTGCGTATCTCAAGAACTACGTTACGAACAACTCGAAAAAGTTCGGCGCGATCCTCAAGACCGGCACCATTTATACCTTCCCGCATCTTCAAGACAGCGGTAGCTTATCCCTCGCAGGATATACTTGCGCTGTAGTGGTGGTAAGTGGTGGCGGTGATATCATTGACGGCGGCACCATTCGCTTGCGAATTGGTAACGTCACTTTCGCGCCGCCGTCTCAGTTCCTTGGTGATAACCCTGCCGTAAGCTCGTTTTCTGCCGGTTCTGGCGGATCGTTTTCCGGCGCATCGCAGTTCGCCATGTTCAAATCTGGCGGCGTTTGGTATGCCACGTTCAACGGTGTGGCGTTTGTTGTCGGCTCTGGCGATTCTTTCACATGGGGTAAAGACGACGGCACGCAAGGTTCCGTTGCTGCCGGAACGCCGGTAGGATTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0dd0bf4f2acbbc048fdb9c0c45d0e8070110e4530753efe4a2434c4fee6e0f28
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5185
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank