Protein

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Genbank accession
XPP56897.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,88
Protein sequence
MALFMGRKPSDNRPLLHVTSGSESISQLHGAPIASTLFHSDIPYLAISKVIEVTQFKHVEARQSGTRYYHYYEPVIPQEVWNYMNQGYLMCGSNVSYHPNYVEHRPIGVYSSDWSPTSADIFIGNFQGSMGGGHPYGGISSGWAPIDMHDMANADETVDQAVRIQSDSFITDYPTSKSYYRNNWSISGLAPKTKNYKRVIQSPNVSASASRATSASFTKENKINRALFANGTTSSRMRIIRPTAAAPTTLTYSSTNPSDSNFKLIIYIFNVKYNSSNKLEHVKPDISDGIRISREDMVVGDLAMKNGMFITDPAPNEDLLDSTISSHKYKVKYPFFDRLVKGLTLAQLADYPFPYCRFFKSSNGNWSVNEGTGWYNIDTILLVHSPSALLGTGVSLDFSADEIKYKGSKGEYLIASRARKYTPFVLGGDSAITAVFPAETNTFAQLKQGTSFKKEVIDFGPSDWRRVLNPDQCGNYYKTVVKQRIKLPPGSTNKSYLSVHVSSPYLKGEASSTIAGKTSKMNVGIDGYSGWSNLQYMIFSKDHPDKEAVVSDIGFSTMRDVSKTSSDKSWWYFSSTGNKMQAVRIQYKIRVNWVRNELELVGWYKLTNAALQCAEYSGKTTYYNKLGERDVTYKTPEVRLGFYILGTA
Physico‐chemical
properties
protein length:648 AA
molecular weight: 72441,79310 Da
isoelectric point:9,16555
aromaticity:0,12037
hydropathy:-0,41806

Domains

Domains [InterPro]
IPR059609
RBD
1–634
IPR059609
XPP56897.1
1 648
Architecture
RBD
RBD 1-634 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPP56897.1
1 648
Domain Start End Length (AA) Confidence
N-terminal 1 80 80 0,4780
Central domain 81 279 200 0,3247
C-terminal 280 648 368 0,9373
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-80
Central
81-279
C-terminal
280-648

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Luma
[NCBI] 		3388592 Viruses >
Host Vibrio campbellii
[NCBI] 		680 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPP56897.1 [NCBI]
Genbank nucleotide accession
PQ768828 [NCBI]
CDS location
range 8237 -> 10183
strand -
CDS
ATGGCACTTTTTATGGGCAGAAAGCCCTCAGATAATAGACCACTATTACATGTAACTAGTGGCAGCGAGTCTATTTCTCAACTACATGGGGCACCTATAGCATCAACGCTATTTCACTCAGATATACCATACTTAGCAATATCAAAGGTTATAGAGGTAACTCAATTTAAGCACGTAGAGGCTAGACAATCGGGTACTAGATATTACCACTACTATGAACCGGTTATACCACAAGAGGTATGGAACTACATGAACCAAGGATACCTAATGTGTGGCTCAAACGTATCATACCACCCTAACTACGTAGAGCATAGACCTATAGGTGTATATTCTAGTGACTGGTCTCCTACTTCCGCAGATATATTTATAGGTAATTTTCAAGGTTCTATGGGAGGAGGACACCCTTACGGTGGTATTTCCAGTGGTTGGGCACCTATAGATATGCATGATATGGCTAATGCTGACGAAACGGTGGATCAGGCAGTGCGTATCCAAAGTGATTCATTTATAACAGACTACCCTACTAGTAAAAGTTACTATAGAAATAACTGGAGCATATCTGGTTTAGCACCGAAAACTAAGAACTATAAAAGAGTAATTCAGTCTCCAAATGTGTCTGCATCAGCTAGTAGAGCTACATCAGCTAGTTTCACTAAGGAAAACAAAATAAATAGAGCACTGTTCGCTAATGGTACTACATCATCTAGGATGCGTATTATTAGACCTACAGCAGCAGCTCCAACTACTCTAACTTACTCATCTACTAACCCGTCAGATAGTAACTTCAAATTAATTATTTATATATTTAATGTAAAATATAATTCTAGCAACAAACTAGAGCATGTGAAGCCTGATATAAGTGATGGTATACGCATATCTCGTGAAGATATGGTAGTAGGTGATTTAGCTATGAAAAACGGAATGTTCATAACTGACCCTGCTCCAAATGAAGATTTACTAGATAGTACAATTTCTAGTCATAAATATAAAGTCAAGTATCCGTTTTTTGACAGGCTAGTAAAGGGTTTGACGTTGGCACAACTAGCAGACTACCCATTCCCTTACTGTAGATTTTTTAAGAGTAGCAATGGTAACTGGAGTGTTAATGAGGGTACAGGCTGGTATAACATTGATACTATACTACTAGTGCACTCCCCGTCAGCGCTTCTTGGGACTGGCGTATCACTAGACTTCTCGGCGGATGAGATTAAATATAAAGGAAGTAAAGGTGAATATTTAATAGCATCAAGGGCTAGAAAGTATACACCTTTTGTACTTGGCGGTGATTCGGCTATTACGGCAGTATTTCCAGCTGAAACCAATACCTTCGCGCAATTAAAACAAGGTACTTCATTCAAGAAAGAGGTAATAGACTTCGGGCCATCAGATTGGAGACGTGTTCTGAACCCTGACCAATGTGGGAATTACTATAAAACAGTGGTGAAACAAAGAATAAAGCTACCACCAGGCAGTACTAATAAGAGCTATTTATCAGTGCATGTTAGCTCACCATACTTGAAGGGGGAGGCGAGCAGCACGATTGCGGGTAAAACGTCTAAAATGAATGTAGGTATTGATGGGTATTCCGGCTGGTCAAACTTACAATACATGATATTTAGTAAGGATCATCCTGATAAGGAAGCGGTTGTATCTGATATAGGATTCAGCACAATGCGAGATGTATCAAAAACAAGCTCGGATAAGTCTTGGTGGTATTTCTCTAGTACTGGTAATAAGATGCAGGCTGTAAGAATACAATATAAGATACGGGTAAATTGGGTGCGCAATGAGCTAGAATTGGTAGGGTGGTATAAACTTACTAATGCTGCCCTACAGTGTGCTGAGTATTCTGGCAAGACAACATACTATAATAAACTTGGCGAGAGAGACGTAACGTACAAGACACCTGAGGTACGGTTAGGTTTCTATATATTGGGTACGGCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
e682c9ffe330e8e1b68610304bc88d1e83449f9244bf5891443191e80d03fea0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2704
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50