Protein

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Genbank accession
XVB93813.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATTPTTGDIPSNAAVDLKFNSEQFDRVMNSDDLTYTDRFGKKRITMKGVQELANGFQDTFTNLLGSPDGFKLIGGVKSFDTLRSTPVKAEGQRIFLKSYYENGNTGGGIFIGHIGTKLDDSGTVAQGVNFYWERSLDGIVPTIEMFGCPNDASTDAGPYITKALNVMGEICLQNRTYYVDSADIPSNSKIVSLGGAVIRPLTGGASAKFNLGSGREKIRFENIKFSDPANLVTSEDALLINAESVTGLTITNCTFEGLKQRCVRVRNGSGIKITNNKFKGSLPHSQLSDERSAEIYLVDTLEHVIVSENQFYGADTGLWGSREIAIFVHAVTSGTYWNDVHITSNYTENYRRFGIGVGTQDIGTLNQLSKNVWITENLIVNSGQEGIKMKAGSIVHVDNNTVDGFEGIMPEVPDSLNGGIFMQINAESTCNGNRIYGRNKKLWSGAVTSATTTTVSLPTSNWTTYTISASGGSGVSAIVGKYVYISSGTGAGQWRRIVSWSAATNMATINTAWTTQPDTTSVIDVYSNPSIGIKYRGNNTGVATWADSRTARCFQSENNYVEGCEVGFGLSEPLFNCQFSSLHAQNCRAILKTYSGTLKTTRGIQFFGLTGQYVDYPSTDNSSAVTFTDCSQIEIHGLKISGSYYDGLRLSNIDNFKIFGGVIEGCGMGVTGRYGLAIAGGVTNFESHGMTYGGANAGTGQSYAAFFQNTNSGISFFGGSMLGNVTGVFNSGSSGALYPPRDTVFSGVAGVGQIKGVTLVDNASKVIVPGTDKDTVLFNTALTAIRTVTFSTAFVEDGCVYTICRSAAATGSFALNVVTAVGTQALAVGSYLRVIYSSTLGWIPVSYGLLS
Physico‐chemical
properties
protein length:852 AA
molecular weight: 90981,77390 Da
isoelectric point:5,94947
aromaticity:0,09859
hydropathy:-0,08955

Domains

Domains [InterPro]
DC_0282
STR
13–546
DC_0282 IPR011050
IPR012334
STR
144–460
IPR012334 IPR006626 IPR006626
IPR011050
STR
150–408
IPR011050
IPR006626
Unmapped
216–243
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR039448
ENZ
241–407
IPR039448
XVB93813.1
1 852
Architecture
STR
STR
STR 13-546 | STR 577-756 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XVB93813.1
1 852
Domain Start End Length (AA) Confidence
N-terminal 1 156 156 0,9916
Central domain 157 461 306 0,9938
C-terminal 462 852 390 0,3156
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-156
Central
157-461
C-terminal
462-852

Taxonomy

  Name Taxonomy ID Lineage
Phage Raoultella phage VB_ZK_P1
[NCBI] 		3425683 Viruses > unclassified bacterial viruses >
Host Raoultella ornithinolytica
[NCBI] 		54291 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XVB93813.1 [NCBI]
Genbank nucleotide accession
PV662128 [NCBI]
CDS location
range 142231 -> 144789
strand +
CDS
GTGGCTACAACTCCAACTACGGGTGATATCCCCAGCAATGCTGCGGTGGACCTCAAGTTTAACTCGGAACAATTCGACCGAGTGATGAATTCTGACGATCTGACTTATACAGATCGTTTTGGTAAAAAACGTATTACGATGAAAGGGGTTCAGGAACTCGCCAATGGTTTCCAAGATACTTTCACGAATCTGTTGGGTTCTCCCGACGGATTTAAATTGATCGGCGGGGTGAAATCTTTTGATACCCTGAGATCGACACCAGTTAAGGCCGAAGGCCAACGTATTTTCCTCAAGTCCTATTATGAAAACGGTAATACTGGCGGTGGGATTTTCATTGGTCATATCGGGACTAAGTTAGACGATAGCGGTACGGTAGCCCAGGGTGTTAATTTCTATTGGGAAAGATCCCTAGACGGAATAGTCCCAACAATAGAAATGTTTGGATGCCCAAATGACGCTTCTACTGACGCCGGGCCTTATATTACTAAAGCGCTTAACGTCATGGGTGAAATCTGTCTACAGAACAGAACCTACTACGTCGATTCCGCAGACATCCCGTCGAATAGCAAGATCGTTTCTTTAGGAGGGGCAGTAATACGACCGCTCACAGGAGGTGCGTCTGCTAAGTTTAATTTGGGTTCAGGAAGAGAAAAAATAAGATTCGAGAATATTAAATTCTCAGACCCGGCGAATCTCGTAACTAGCGAAGACGCACTTTTAATAAATGCTGAAAGTGTTACCGGTTTGACCATTACCAATTGTACTTTTGAAGGCTTAAAACAGCGCTGCGTTAGAGTCAGAAACGGATCTGGAATTAAGATTACCAATAACAAATTTAAAGGCAGTCTTCCTCATTCCCAATTAAGCGATGAAAGATCTGCTGAGATTTATCTGGTGGACACCCTTGAACACGTTATTGTTTCTGAGAATCAGTTCTACGGGGCCGATACCGGCCTGTGGGGGTCGAGAGAAATAGCGATATTCGTTCACGCGGTGACTTCTGGAACATATTGGAATGACGTCCACATCACGAGTAATTATACCGAGAACTATCGTCGATTTGGGATAGGTGTGGGGACTCAGGATATCGGAACGCTAAATCAGTTATCAAAAAATGTGTGGATAACTGAAAATTTGATCGTTAATTCCGGACAAGAAGGGATTAAGATGAAAGCCGGTTCGATAGTCCACGTTGATAACAACACAGTGGATGGATTCGAGGGCATAATGCCCGAAGTTCCAGATTCATTAAACGGCGGCATATTCATGCAAATTAACGCCGAATCAACTTGTAACGGGAACCGAATTTACGGCAGAAATAAAAAGTTATGGTCTGGGGCGGTGACTTCCGCTACGACTACAACCGTTTCTCTCCCTACTAGTAACTGGACGACTTACACGATATCGGCGTCCGGAGGGAGTGGTGTTAGCGCGATCGTTGGGAAATACGTTTATATCAGTTCTGGAACTGGGGCGGGGCAGTGGCGTCGTATTGTGAGCTGGAGTGCCGCAACCAATATGGCTACCATCAACACCGCATGGACGACGCAGCCAGATACCACCAGTGTAATAGATGTTTATAGTAATCCTTCTATAGGGATCAAATATCGTGGCAACAATACTGGCGTCGCCACCTGGGCTGATAGCAGGACCGCGAGATGTTTTCAGAGTGAGAACAACTATGTGGAAGGTTGCGAAGTAGGATTCGGCCTATCAGAACCCCTTTTCAATTGTCAATTTAGCTCGCTTCATGCTCAGAACTGTAGAGCTATATTAAAAACTTATTCCGGGACATTGAAAACCACCAGGGGTATTCAGTTCTTTGGCTTAACCGGACAATACGTTGATTATCCGTCTACTGATAACTCATCTGCGGTAACGTTTACAGATTGTAGTCAGATCGAAATACATGGTTTGAAAATATCCGGAAGTTATTACGACGGGTTACGACTTTCTAACATCGATAACTTTAAAATTTTCGGTGGGGTCATAGAAGGATGCGGGATGGGAGTCACGGGCCGTTACGGGTTAGCCATTGCTGGCGGGGTGACTAACTTTGAATCTCACGGTATGACCTACGGCGGCGCTAACGCAGGAACGGGTCAAAGTTACGCGGCGTTTTTCCAGAACACTAATAGCGGTATTTCCTTCTTCGGGGGGAGTATGTTGGGTAACGTTACAGGGGTGTTTAACTCAGGGTCGTCTGGTGCACTATATCCCCCAAGGGATACCGTCTTTAGCGGGGTAGCCGGGGTGGGTCAGATTAAGGGTGTGACTCTCGTTGATAATGCGTCCAAAGTAATCGTCCCCGGTACTGATAAAGACACTGTTTTATTTAATACCGCGCTGACCGCGATTAGAACAGTAACTTTCTCCACGGCCTTTGTTGAAGATGGTTGTGTGTACACCATCTGTAGATCGGCCGCTGCCACGGGGAGTTTTGCTCTCAACGTAGTGACCGCGGTAGGAACACAAGCTCTCGCAGTAGGTTCCTACCTAAGAGTTATTTACTCGAGTACGCTAGGTTGGATCCCTGTTTCCTACGGTTTATTGAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1d3d0f243659352d133d551eaf5d283916665a4da269342233a090edbc11f0f0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7365
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and identification of R. ornithinolytica phage and its targeted bacteriostatic effect on chilled pigeon meat Feng,S., Zhong,L., Zhou,J., Huang,Y., Sun,Y., Yuan,D. and Liang,W. 2025 — GenBank