Protein

View in Explore
Genbank accession
AGN12245.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,68
Protein sequence
MAAFDFPNSPSLNDTHTENGVIWKWNGYAWDRVPSSGPQGAPGPTGPAGPTGPSGPTGGDGPPGPGGPGGGTGPAGPPGPPGNDGADGSDGGTGTPGPAGPPGPPGNDGADGNDGGSGPTGPTGPTGPTGPTGPTGPAGARNYTITNSGSGSYCVDSVCSNPTITLLRGLSYTFTVNASGHPFYIKTSQTTGTGNQYNTGVTNNGTQSGTITWNVASDAPSTLYYICQYHSAMTGTISISDLGPAGPPGPTGPTGPTGPTGPTGPSGGTGPTGPAGADGSDGADGGTGPTGPAGPTGGDGPPGPTGPGGTGPTGPTGDDGPPGPPGPGGTGPAGPPGPPGADGDDGGSGPPGPPGSDGSDGGSGPPGPPGPTGGDGPPGPGGTGPTGPTGPTGPSGGSGPPGPPGTSGATVIPSGTVMVFMQSSAPTGWSRTSSYDGRAIRISSSGGGTGGSRSWDNTFDYITKWHSNVLTGRVTDGHTLTSSQGPVHNHSYDVPRGSWGGQYGFQDTANSGSSGTQAVAGNTPGGGSHSHDLNNISLNIGTYVDRRLVYATAIICSKN
Physico‐chemical
properties
protein length:559 AA
molecular weight: 52754,44330 Da
isoelectric point:4,43511
aromaticity:0,05367
hydropathy:-0,67478

Domains

Domains [InterPro]
PTHR24637
Unmapped
35–141
PTHR24637 IPR008972
DC_0856
STR
54–546
DC_0856
IPR008972
STR
160–246
IPR008972
AGN12245.1
1 559
Architecture
STR
STR 54-546 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM5
[NCBI] 		536454 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN12245.1 [NCBI]
Genbank nucleotide accession
HQ632825.1 [NCBI]
CDS location
range 60188 -> 61867
strand -
CDS
ATGGCAGCATTCGATTTTCCAAACAGTCCGTCCCTTAATGATACCCATACAGAAAATGGGGTAATTTGGAAGTGGAATGGATACGCTTGGGATAGAGTTCCAAGTAGTGGTCCGCAAGGTGCTCCTGGTCCTACAGGTCCAGCAGGTCCTACAGGTCCATCAGGTCCTACAGGTGGAGATGGTCCTCCAGGTCCAGGTGGTCCAGGTGGTGGCACAGGTCCAGCAGGTCCTCCAGGTCCTCCTGGAAATGATGGTGCTGATGGTTCTGATGGTGGAACTGGTACTCCAGGTCCAGCAGGTCCTCCAGGTCCTCCTGGAAATGATGGTGCTGATGGAAATGATGGTGGATCAGGTCCTACTGGTCCGACAGGTCCCACAGGACCAACTGGTCCCACAGGTCCAACTGGTCCTGCTGGAGCAAGAAATTATACTATAACAAATAGTGGATCTGGTTCTTACTGTGTTGATAGTGTATGCAGTAATCCAACAATAACTTTATTAAGAGGTTTAAGTTATACTTTTACTGTAAATGCAAGTGGACATCCATTCTATATTAAGACCTCTCAAACTACTGGAACGGGTAATCAATATAATACGGGAGTAACAAATAACGGTACTCAATCAGGAACTATAACTTGGAATGTTGCATCTGACGCACCAAGTACTCTTTATTATATTTGTCAATATCATAGTGCTATGACAGGCACTATTTCTATATCAGATTTAGGTCCTGCTGGTCCTCCAGGTCCAACTGGTCCTACAGGACCTACAGGTCCAACTGGTCCAACTGGTCCTTCAGGTGGAACTGGTCCAACTGGTCCTGCTGGTGCTGACGGAAGTGATGGTGCTGATGGTGGAACTGGTCCGACTGGTCCTGCTGGTCCTACTGGTGGAGATGGTCCTCCAGGTCCAACTGGTCCAGGCGGAACTGGTCCAACTGGTCCTACTGGTGATGATGGTCCTCCAGGTCCTCCAGGTCCAGGCGGAACTGGTCCTGCTGGTCCTCCAGGACCTCCTGGTGCTGACGGTGATGATGGGGGAAGTGGTCCTCCAGGTCCTCCAGGTTCTGATGGTTCTGATGGAGGAAGTGGTCCTCCAGGACCTCCAGGTCCTACTGGTGGAGATGGTCCTCCTGGTCCAGGTGGAACTGGTCCGACTGGTCCAACTGGTCCAACAGGTCCTTCAGGTGGAAGTGGTCCTCCAGGTCCACCAGGAACTTCAGGTGCTACAGTAATTCCTTCAGGCACTGTTATGGTATTCATGCAAAGTTCTGCTCCTACTGGATGGTCTAGAACTTCATCTTATGATGGTAGGGCGATAAGAATTTCAAGTTCTGGTGGTGGTACTGGTGGTAGTAGATCTTGGGATAATACTTTTGATTATATAACTAAGTGGCATAGTAATGTACTTACTGGTAGAGTTACTGATGGACATACATTAACATCATCTCAAGGTCCAGTTCACAACCACTCTTATGATGTTCCTCGTGGATCTTGGGGTGGACAGTATGGTTTCCAAGATACAGCAAACTCTGGTTCTTCTGGAACTCAAGCAGTTGCTGGTAATACACCAGGAGGTGGAAGTCACAGTCACGATCTTAATAACATATCTCTTAATATTGGAACATATGTAGATAGACGACTTGTGTATGCTACTGCTATAATATGCAGTAAGAACTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
e8c35736d87f76b8cc5963daa90847e86f6e4fefe91e5ced3e9324d25115a550
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6238
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSM5 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank