Protein

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Genbank accession
YP_009848724.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,98
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MGFFAGKYSDGKTVLSLNKVNGGDINAHKTPNANTIFHSDMPFVLVESTYESALSSAGNGFYVCQMPSVIANLKSNDPGRVILTAVEINGTHRAFLNGTQSQVGQFLAFFEDPPIGRAGAELGLTSAFASGNSLAHGTYTYNSSLGHEESIARQGTGGTISQASGFNMYRPGGAYAGEAIGRAWTLAGFPAGASKVSINSGNVDFWHPNWQAPIGAGKRGHNWFYVCNSNIRGYAGKKGTTPSNVSVLYNSSTYPNKVYVCRGSTSNLASQAAKKVYVQDSYNITPTRVIWYVLNLRYSNGGMSVASNPFTGSDIRISPSNFTIKGVSLPNTSYKFINQNAFGNLSSRPDMEYIGNNVAYTGVFGDTTARCEIVGSNKGSLWSPVSYGGSKSQISIYKFSAGKQWYVNSNNNTIGNEHGVVWGPSSVPLRLLPNNVASTYIGDDINPSYPGTGNKYVALSTVGLGLPNANSTVILTTEVVAGNLNTAGGPIRTYGGTAWQVQGRRQQSYTGGDGVFHQILTLPPNQLVPFHTTASYSYTQQWASRPDDLTFTRSGFIYTIKNLGNGNAELGVVIHANESAAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:595 AA
molecular weight: 63628,16100 Da
isoelectric point:9,40254
aromaticity:0,10924
hydropathy:-0,23866

Domains

Domains [InterPro]
IPR059609
RBD
1–595
IPR059609
YP_009848724.1
1 595
Architecture
RBD
RBD 1-595
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009848724.1
1 595
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0021
Central domain 11 209 200 0,0395
C-terminal 210 595 385 0,9799
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-595

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SE11
[NCBI] 		2592195 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus SE11
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009848724.1 [NCBI]
Genbank nucleotide accession
NC_048786 [NCBI]
CDS location
range 69037 -> 70824
strand +
CDS
ATGGGTTTTTTCGCTGGAAAATATAGTGATGGTAAAACTGTATTATCACTAAACAAAGTGAATGGTGGGGATATTAATGCCCACAAAACTCCTAATGCCAATACTATATTTCACTCTGATATGCCATTTGTTCTAGTTGAGAGTACGTATGAAAGTGCATTAAGTAGTGCTGGGAATGGTTTCTACGTATGCCAGATGCCTTCTGTGATAGCTAACCTAAAGAGTAATGATCCTGGTAGGGTTATACTAACCGCTGTTGAGATAAATGGTACACATAGAGCTTTTCTTAATGGTACTCAATCCCAGGTTGGACAATTTCTTGCATTTTTTGAAGACCCCCCTATTGGCAGGGCTGGTGCTGAATTAGGTCTTACGTCAGCTTTTGCATCTGGTAATAGTTTAGCACATGGTACTTATACTTATAACTCTAGTCTAGGCCATGAAGAGTCAATAGCTAGACAAGGTACTGGTGGTACCATATCTCAAGCCTCCGGGTTTAATATGTATAGGCCAGGAGGGGCATATGCTGGTGAGGCTATTGGAAGGGCATGGACTTTAGCAGGGTTTCCAGCTGGAGCATCTAAAGTATCTATAAATAGTGGTAATGTTGACTTCTGGCATCCTAATTGGCAGGCTCCTATAGGGGCGGGAAAAAGAGGTCATAATTGGTTTTACGTTTGTAACTCCAATATACGTGGATATGCTGGTAAAAAAGGCACTACGCCAAGTAATGTTAGTGTACTATATAATTCTTCTACCTATCCAAATAAGGTTTATGTATGTAGGGGCTCGACATCTAATTTAGCATCACAGGCGGCAAAGAAGGTGTATGTGCAGGATAGTTATAATATCACTCCTACCAGGGTTATTTGGTATGTGCTGAATCTTAGATACTCTAACGGTGGTATGAGCGTTGCTAGTAATCCTTTTACTGGATCCGACATTCGTATAAGCCCTTCTAACTTTACTATAAAAGGTGTTAGTCTTCCAAATACTAGTTACAAATTCATTAATCAGAATGCTTTTGGTAACTTATCATCTAGACCTGATATGGAGTACATTGGTAATAACGTTGCTTATACCGGAGTCTTTGGGGACACTACAGCAAGATGCGAAATTGTAGGTTCTAATAAAGGTTCTTTATGGTCGCCTGTAAGTTATGGGGGTTCTAAGTCTCAGATAAGTATTTACAAATTCTCTGCTGGTAAACAATGGTATGTTAATTCCAATAATAATACTATAGGTAATGAGCATGGAGTTGTTTGGGGACCTTCTTCAGTACCTTTACGATTACTACCAAATAACGTAGCTAGTACTTACATAGGTGATGACATAAACCCTTCTTATCCAGGTACAGGGAATAAGTACGTAGCCCTATCTACAGTAGGTCTTGGATTACCTAATGCAAACTCTACAGTAATTCTAACTACTGAAGTAGTTGCCGGAAATCTTAATACAGCAGGAGGTCCTATACGAACATATGGTGGTACTGCGTGGCAGGTGCAAGGTAGAAGACAACAAAGTTATACAGGTGGTGATGGGGTATTCCATCAAATATTAACTTTACCCCCTAATCAGTTGGTGCCCTTCCATACTACAGCTTCTTATAGCTATACACAGCAGTGGGCTAGTCGACCTGATGATTTAACATTTACTAGAAGTGGATTTATTTATACTATTAAAAATTTGGGTAACGGTAACGCTGAATTAGGTGTAGTTATACATGCAAATGAATCCGCCGCAGTTTTCTTACCGAGATTACGAGTAACAGTTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5002598917abea96db11697a671adeecacc9a63255434aee6dffa1471a1d0c92
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3084
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Salmonella bacteriophage diversity and host specificity revealed by physiological characterization and whole genome sequencing Fong,K., Tremblay,D., Delaquis,P., Moineau,S., Goodridge,L., Levesque,R. and Wang,S. 2019-09-14 — GenBank