Protein

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Genbank accession
XVB82447.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MVYPNPVRNGLMLWFDSKSYENNNAQKQIARNLVTNSKTGKLNNFAYTDGSGYKDGVQFDGIDDFISFSDITVDNFTNKERFTFEFTITFTNSNKRGAVFCVPMTLPNDGSKRLMVKVTENREIAVGRYNGAWKGKKTLPITKDKVNIALTFEDMESSDFILNAYVDGKPFDLTTGSVPSSEYYGNPYSHLVIGWQGTNSQPENAYLKEIIHSARIYDRVLSSQEILNNYLVEKERWEL
Physico‐chemical
properties
protein length:239 AA
molecular weight: 27247,21440 Da
isoelectric point:5,80277
aromaticity:0,12552
hydropathy:-0,53054

Domains

Domains [InterPro]
DC_1411
STR
1–239
DC_1411
IPR013320
STR
11–231
IPR013320
G3DSA:2.60.120.200
STR
15–232
G3DSA:2.60.120.200
PF13385
LEC
63–226
PF13385
XVB82447.1
1 239
Architecture
STR
STR 1-239
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XVB82447.1
1 239
Domain Start End Length (AA) Confidence
N-terminal 1 130 130 0,0433
Central domain 131 228 99 0,2336
C-terminal 229 239 10 0,9949
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-130
Central
131-228
C-terminal
229-239

Taxonomy

  Name Taxonomy ID Lineage
Phage Mammaliicoccus phage phi36
[NCBI] 		3414227 Viruses >
Host Mammaliicoccus sciuri
[NCBI] 		1296 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XVB82447.1 [NCBI]
Genbank nucleotide accession
PV389078 [NCBI]
CDS location
range 30100 -> 30819
strand -
CDS
ATGGTTTATCCTAACCCTGTTCGAAATGGACTGATGCTTTGGTTTGATTCAAAGAGTTATGAGAACAACAACGCTCAAAAACAAATTGCAAGAAATTTAGTAACTAATTCTAAAACTGGTAAACTAAATAACTTTGCATACACAGACGGAAGTGGTTATAAAGATGGAGTTCAATTTGATGGCATTGATGATTTTATAAGTTTCTCAGATATTACGGTAGATAATTTCACTAACAAAGAAAGATTCACTTTTGAATTTACTATTACTTTTACGAATTCAAATAAACGAGGAGCGGTATTTTGTGTACCTATGACACTACCAAATGATGGTAGTAAAAGATTAATGGTTAAGGTTACTGAGAACAGAGAAATTGCAGTTGGTAGATATAATGGAGCTTGGAAAGGCAAAAAAACATTACCTATCACTAAGGATAAGGTTAATATAGCATTAACTTTTGAAGACATGGAAAGTTCTGATTTTATTTTAAATGCTTATGTGGATGGAAAACCTTTTGACTTAACTACTGGAAGCGTTCCTTCAAGTGAATATTATGGGAACCCTTATAGTCATTTAGTTATTGGTTGGCAAGGTACGAATTCACAACCTGAAAATGCATATTTAAAAGAAATAATTCATTCAGCTAGAATTTACGATAGAGTCTTGTCAAGTCAAGAAATACTAAATAATTACCTTGTTGAAAAAGAAAGGTGGGAACTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
66eecde897fc8461bc46de9947dadb946e5be4262e88c0435a355a48a9993176
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9015
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterisation of phylogenetically distinct temperate phages from Kenyan Mammaliicoccus sciuri Cherbuin,J.D.R. 2025-12-01 — GenBank