Protein

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Genbank accession
YP_009821324.1 [GenBank]
Protein name
gp40
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,64
Protein sequence
MAQTFEGTLQSLLQGVSQQIPRERQPGQLGAQQNMLSDPVTGLRRRPPLHLAAQTLMENPVSPDALFSTYIERGTDGRHLLINTEAGIWQILSKDATTLIRSGQADYLKASIGATSIQTASIAGLTYILNTEQTPVAHVDNTGKLNPANTGFFYIVASSFSKRWTITVQSNEGTWTAVHDVGASSDDGAVPAATASAVINSLKTNLLAAGMPSDKVDTFGSYMFIKGLTNVVVSSDAGTTYARWSNQSRVDEESDLPAQLPASANGCMCRVGAASTSATWYRFDYATRQWNEDSAYSSITKITNMPLEFAADDQIIPRDFEGRLAGDDENNEDPGFVENGYITGIAAFQGRLVLLSGSRVSMSASGLYQRFYRSTVVNLLDTDRIDIGAASAQDSVFRAALQFNRDLVVFGDSMQAVIAGNAVLTPTNASIALTSEFSCDSRVIPVVTGQTVLYASRRNSDYAGLLEFIPSAYTSSQYVSQDATVHLPRYIPGRVMDMQVSSVTNVAFFRYSGERTSVLVYEFLWGEDAKRAQGAYHKWVLPYDVLSLHTLSEAAYFFVRGPGAYVLALRVDPREGFVAGTTYEYPFMDMGAPVTVQGGQFTLPEHLRKAGLQDSIALAYYTGDDSGSELGIASISSNWVCTTVRGVPDGNYLAGYRFKSGTTLTPPMLKDQNDNLIGSGHVRLLRLDVAMRNSGVVDVLVEDNARDVDNDSEYSGVLMNSKELAPEQPLKASLSNIIIPCRTNTDTTEVTLSTSGTLEMNIMDVSYILRYNQRRRRV
Physico‐chemical
properties
protein length:778 AA
molecular weight: 84711,94480 Da
isoelectric point:5,04312
aromaticity:0,08740
hydropathy:-0,16414

Domains

Domains [InterPro]
IPR058003
TTP
6–778
IPR058003
YP_009821324.1
1 778
Architecture
TTP
TTP 6-778
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009821324.1
1 778
Domain Start End Length (AA) Confidence
N-terminal 1 145 145 0,9954
Central domain 146 344 200 0,0934
C-terminal 345 778 433 0,1417
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-145
Central
146-344
C-terminal
345-778

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Buco
[NCBI] 		2530183 Uroviricota > Caudoviricetes > Autographivirales > Slopekvirinae > Bucovirus
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009821324.1 [NCBI]
Genbank nucleotide accession
NC_048174 [NCBI]
CDS location
range 26451 -> 28787
strand +
CDS
ATGGCTCAGACTTTCGAAGGGACCTTGCAGAGTCTGCTGCAAGGGGTTTCCCAGCAAATCCCGCGGGAGCGTCAACCTGGGCAGCTGGGCGCACAGCAGAACATGCTCAGTGACCCGGTGACAGGATTACGCAGACGCCCACCATTGCACCTGGCTGCACAGACGCTTATGGAGAATCCAGTGAGTCCGGATGCCCTGTTCAGCACGTACATAGAACGAGGCACTGACGGGCGGCACCTGCTGATTAATACAGAGGCAGGTATCTGGCAAATACTAAGCAAGGATGCAACCACGCTCATCCGGTCTGGACAAGCAGACTACCTCAAGGCCAGTATCGGTGCTACCAGTATTCAGACGGCAAGTATTGCGGGCCTAACTTACATCCTCAACACAGAGCAGACACCAGTAGCGCACGTAGATAACACTGGAAAGTTAAACCCTGCAAACACGGGTTTCTTTTACATAGTCGCCAGTTCCTTTAGTAAACGATGGACTATCACGGTTCAATCAAATGAAGGCACCTGGACTGCTGTGCACGACGTGGGTGCGTCCTCGGACGACGGGGCTGTACCTGCTGCGACTGCCTCCGCTGTTATAAACTCTTTGAAGACGAATCTTCTGGCTGCGGGAATGCCCAGCGACAAGGTTGATACGTTCGGAAGTTATATGTTCATCAAGGGGCTGACTAACGTAGTAGTGTCTTCTGATGCTGGTACTACTTATGCCAGATGGTCCAACCAGAGCCGTGTGGATGAGGAGTCGGACCTGCCTGCGCAGTTGCCCGCTAGTGCCAACGGCTGCATGTGCCGTGTAGGTGCCGCCAGTACCAGCGCTACGTGGTATCGTTTTGACTATGCTACGCGCCAATGGAATGAGGACTCTGCTTATAGCAGTATCACGAAGATTACGAACATGCCTCTGGAGTTTGCGGCAGATGACCAGATAATCCCCAGGGATTTTGAGGGACGGTTAGCTGGTGACGACGAGAATAACGAGGACCCGGGTTTTGTTGAGAATGGCTACATCACTGGTATAGCGGCATTCCAGGGCCGCCTGGTGCTGCTTTCGGGCAGCCGGGTGAGTATGTCTGCATCTGGGCTCTATCAGCGATTCTACCGCAGTACAGTGGTGAATCTGCTGGACACGGACCGTATAGACATCGGCGCTGCTTCCGCTCAAGATTCCGTCTTCCGTGCCGCACTTCAATTTAACCGAGACCTGGTGGTGTTCGGCGATAGTATGCAGGCGGTGATTGCAGGAAATGCCGTGCTTACGCCTACTAACGCCAGCATAGCACTAACCTCCGAGTTCTCCTGTGATAGCCGGGTTATTCCGGTAGTAACGGGACAGACGGTGCTTTACGCCAGCAGGCGCAACTCTGACTATGCCGGGCTGCTTGAGTTCATACCCTCGGCGTACACCTCATCTCAGTACGTATCGCAAGACGCTACTGTGCACTTACCCCGCTATATTCCTGGCAGGGTGATGGATATGCAGGTATCTTCCGTCACTAACGTAGCCTTCTTCCGGTATTCCGGGGAGCGCACGTCGGTGCTGGTCTATGAGTTCCTGTGGGGTGAGGACGCTAAGCGCGCGCAGGGAGCTTATCACAAGTGGGTACTCCCTTATGATGTGCTGAGCCTGCACACTCTGTCGGAGGCTGCCTACTTCTTTGTGCGTGGTCCTGGGGCGTATGTACTGGCACTGCGTGTGGACCCCCGCGAAGGCTTTGTAGCAGGTACAACCTACGAGTACCCGTTTATGGACATGGGTGCCCCAGTGACAGTGCAGGGTGGTCAGTTCACACTGCCTGAGCATCTGCGTAAAGCGGGCCTACAGGACTCTATAGCGCTAGCGTATTACACAGGAGACGACTCCGGTAGCGAGCTGGGCATTGCCAGTATCAGCAGTAACTGGGTGTGCACTACGGTTCGCGGAGTTCCTGACGGTAATTACTTGGCGGGCTATCGGTTTAAGTCGGGGACCACCCTTACTCCACCGATGCTAAAGGACCAGAATGACAACCTCATTGGGAGTGGCCACGTTCGCCTGTTAAGGCTGGATGTAGCCATGCGTAACTCTGGGGTGGTGGATGTGCTGGTAGAGGATAATGCTCGGGATGTTGATAATGACTCAGAGTACTCTGGGGTGCTTATGAACTCCAAAGAGTTAGCGCCGGAGCAACCACTTAAGGCGAGTCTGTCGAATATCATTATTCCATGCAGGACCAACACCGACACAACCGAAGTCACTCTGAGCACCTCTGGGACTCTGGAGATGAACATCATGGACGTGAGTTATATCTTGCGTTATAACCAACGTAGAAGGAGGGTTTGA

Genome Context

Genome Context

Tertiary structure

1 / 2
PDB ID
Source
Method
Resolution
Oligomeric State

Literature

Title Authors Date PMID Source
A cornucopia of Shigella phages from the Cornhusker state Doore,S.M., Schrad,J.R., Perrett,H.R., Dover,J.A., Schrad,K.P., Dean,W.F. and Parent,K.N. — — GenBank