Protein

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Genbank accession
QBO62404.1 [GenBank]
Protein name
putative long tail fiber, proximal subunit
RBP type
TSP
Evidence RBPdetect
Probability 0,78
TF
Evidence RBPdetect2
Probability 0,82
Protein sequence
MADFSQHFKATFGFDAGNEKVVNVALADKNVNTDAVNVEFFNYHNGITQYDTTRGYDQYGTTIHQNRPYYAKEDITKPAGDFDPTKWQALRTDPRWDYVAATSGDTPLKSGDYIAADCQFANLTFSMPTNPAEGDTITVKDIGGKCGVNELSFLAAGHEFYHNGVVNNRKWYCTTPYAMNYFIFVRNRWHVYQTGTEPRGVYAQPSIDPIQMQNGDQVFRRSSLGNIVLMLPKFANNGDMIQTTDLDGLTATNHVTVKVHEGAQEQSIGTFGLKEIVGKRSGHGVFIFDKPENLWRVWDGDQSVRLNPIIDDTRLSPNSYVAVFGDHDVTLTLPTNVEPGDRIQVSMQYMHGNQTCRIITAAEDTKILMQKNMVQFPKRSEYPFNGTDTWTEVSELSFNAANDYVPYLEFSYSEGDDGKKHWLVAHAHPIVERVDPTRKDRVGVIALATQDETNKNHEDNPSDEVAVTPKVLANKTANETRRGIARIATQAETHQDTGSSFLDDVIVTPKKLNDCVATEARRGVMEIATQHETNEGLDDTRAITPKKLEERRASEDLAGIAEIVQVGGNAAARRGEAGTGIYNINDHAKIVTPQNINEVKATETSRGVGYLATDAEVQGATESTPQDALLITTRTLTKRIATESRTGIAEIATQEETNLGQSDNHIITPKKLHTRRATETLHGLAEIATQPEFDAGRDDARISTPLKIKTFFENAQRLKVDPTQGLNLTGDLWQGIMISGLDATEDTKGVAKVATTQLTDAGEDDATIITPKKLQGKKATEGKEGIIRVGTQAETVAGTMDNVAISPKNFKYVAQTEESWQATEARRGFLKVATQENCFVGDNLQGSTQDLDNYQHDGIAVTPKGLNYALANFLPKMATAQNSLKLGNVEAAKWARRDIDQTIESNYTFNKNVNVKGDLECLKSGSFETLYVTKNSTDDPSNGHLVLGERGVDGHTGITLHGTTLSEGMENSWSIIVGGTGTAQVVDSDAIAFGKINDSGFVEHYAFAMEHNGDAAAYRDFIAGRNLYAKQGGLYIVDQSNPAMTRSEDGMLNIGHGGSVNIKAGYQTLTTEIAGQKYQIVHAGNADEVLNRQFVKNAGDTMTGKLIMDNASIVSVKHEAIATTAPAIGNIGFWNMRVTTQNIKETYPEKKNGTLMQWGTDENGLTQIWSPDGTHKHYIRSGTDGQWTAWGEIYTKQNKPTAQEIGAVVAEGGLMNSMTVRDWIKVGNVKIIANNLTRTVDFIWED
Physico‐chemical
properties
protein length:1246 AA
molecular weight: 136939,79010 Da
isoelectric point:5,33578
aromaticity:0,07624
hydropathy:-0,51019

Domains

Domains [InterPro]
DC_1946
ATT
1–208
DC_1946 DC_1209
cd19958
STR
1147–1194
cd19958
QBO62404.1
1 1246
Architecture
ATT
STR
ATT 1-208 | STR 341-1237 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBO62404.1
1 1246
Domain Start End Length (AA) Confidence
N-terminal 1 363 363 0,5333
Central domain 364 632 270 0,0235
C-terminal 633 1246 613 0,4325
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-363
Central
364-632
C-terminal
633-1246

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM_G2248
[NCBI] 		2502410 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBO62404.1 [NCBI]
Genbank nucleotide accession
MK327932 [NCBI]
CDS location
range 150649 -> 154389
strand +
CDS
ATGGCAGATTTTTCTCAACATTTCAAGGCCACATTTGGCTTTGATGCTGGTAATGAAAAGGTCGTCAATGTAGCATTGGCTGATAAGAATGTCAACACCGATGCGGTCAACGTTGAATTTTTCAATTACCATAATGGTATTACTCAGTATGACACAACTCGCGGTTATGATCAATACGGAACTACAATCCATCAAAACCGTCCGTATTATGCAAAAGAAGATATCACAAAGCCAGCAGGTGACTTTGACCCGACTAAATGGCAAGCACTGCGCACGGACCCACGTTGGGATTATGTTGCAGCAACTTCCGGCGATACTCCTTTAAAGTCCGGTGATTATATCGCAGCGGACTGTCAGTTTGCAAACTTAACATTCTCAATGCCTACTAATCCGGCAGAGGGCGACACTATAACAGTGAAAGATATCGGTGGCAAGTGCGGTGTTAATGAGTTATCGTTCCTTGCGGCTGGTCATGAGTTCTATCATAACGGTGTGGTAAACAACCGCAAATGGTACTGTACTACCCCTTATGCAATGAACTACTTCATTTTTGTTCGCAATCGCTGGCACGTTTACCAGACGGGAACAGAGCCGCGCGGGGTATATGCACAGCCGTCTATTGATCCGATTCAGATGCAAAACGGTGATCAGGTATTCCGTCGTAGTTCTTTAGGTAACATCGTTTTGATGCTTCCTAAATTTGCTAATAACGGTGATATGATTCAGACTACCGACCTTGACGGATTGACTGCAACCAACCATGTTACGGTAAAAGTGCATGAAGGTGCGCAAGAACAATCAATCGGTACTTTCGGGTTAAAAGAAATTGTTGGTAAGCGTAGCGGTCACGGCGTATTCATCTTTGACAAGCCGGAAAACTTATGGCGTGTGTGGGATGGTGATCAGTCAGTTCGCTTGAATCCAATCATTGATGATACTCGCTTATCCCCCAATAGCTATGTTGCTGTATTTGGTGATCATGATGTTACTCTGACATTACCGACTAACGTAGAGCCTGGCGATCGTATCCAAGTTTCTATGCAGTATATGCACGGAAACCAGACCTGCCGAATCATTACCGCCGCAGAAGATACAAAAATTCTTATGCAGAAAAACATGGTTCAGTTTCCTAAGCGTAGCGAGTACCCATTCAATGGGACCGATACATGGACGGAAGTGTCTGAATTGTCTTTCAACGCTGCAAATGATTATGTACCTTATCTGGAGTTCTCTTATTCAGAAGGTGATGATGGTAAGAAACACTGGTTGGTGGCACATGCTCACCCGATTGTAGAACGAGTAGATCCGACTCGTAAAGATCGTGTTGGTGTAATTGCACTGGCTACCCAGGATGAAACAAACAAAAACCATGAAGATAATCCTAGCGACGAAGTTGCGGTGACTCCAAAGGTTCTGGCTAACAAAACAGCCAACGAGACTCGACGCGGTATTGCTCGCATTGCGACTCAAGCGGAAACGCATCAAGATACTGGTTCCAGCTTCCTGGATGATGTTATCGTTACACCTAAAAAGTTAAATGACTGTGTTGCTACCGAAGCCCGTCGTGGTGTGATGGAAATTGCAACTCAGCATGAAACCAACGAAGGTTTAGACGATACTCGCGCAATCACTCCTAAGAAGTTAGAAGAACGTCGCGCGTCCGAGGATCTTGCTGGTATCGCTGAAATTGTTCAGGTAGGCGGTAATGCTGCCGCTCGAAGGGGTGAAGCTGGCACGGGGATCTATAACATCAACGACCACGCTAAAATCGTTACTCCGCAAAACATCAACGAAGTTAAAGCTACTGAAACTTCTCGTGGTGTTGGGTATCTGGCAACTGACGCGGAAGTGCAAGGGGCTACTGAATCAACCCCGCAAGATGCATTGCTGATCACTACTCGCACGTTAACTAAGCGTATTGCTACCGAATCACGTACTGGTATCGCTGAAATTGCAACTCAGGAAGAAACAAACTTAGGTCAAAGTGATAACCATATCATCACGCCTAAAAAGCTACATACTCGCCGTGCAACTGAAACTTTACACGGTTTAGCAGAAATTGCAACTCAACCGGAGTTTGACGCAGGTCGTGACGATGCTCGCATTTCTACCCCATTGAAGATTAAAACCTTCTTTGAGAATGCACAGCGTTTGAAAGTAGATCCGACTCAGGGGCTTAACCTTACTGGTGACTTGTGGCAGGGTATCATGATCAGCGGTCTTGATGCAACCGAAGATACAAAAGGTGTCGCGAAAGTTGCAACTACTCAGCTTACGGACGCAGGAGAAGATGACGCTACGATCATTACTCCTAAAAAGCTGCAAGGCAAAAAGGCCACCGAAGGTAAAGAAGGTATTATCCGAGTTGGTACTCAAGCCGAAACCGTCGCTGGTACTATGGACAATGTAGCAATTTCGCCTAAAAACTTCAAGTATGTTGCGCAGACAGAAGAGTCATGGCAAGCAACGGAAGCCCGTCGCGGATTCCTGAAAGTAGCAACACAAGAAAACTGTTTTGTTGGTGACAATCTGCAAGGTTCTACTCAAGATCTCGATAACTATCAGCATGATGGGATTGCAGTAACTCCGAAAGGATTAAACTACGCACTTGCTAATTTCTTACCTAAGATGGCAACAGCCCAGAATAGTTTGAAATTGGGTAACGTAGAGGCCGCTAAATGGGCGCGTAGAGACATTGATCAGACCATCGAGAGCAATTACACGTTTAATAAAAACGTCAACGTGAAGGGCGATTTAGAGTGCTTAAAATCAGGTTCCTTTGAAACTCTGTATGTGACTAAAAACTCTACTGACGATCCAAGTAATGGTCATCTGGTATTGGGTGAGCGTGGAGTTGATGGTCACACCGGAATTACATTGCATGGTACTACCCTGTCAGAAGGTATGGAAAACTCATGGTCTATTATCGTTGGTGGTACTGGTACGGCGCAAGTAGTTGATAGTGATGCTATCGCTTTCGGTAAGATTAACGATTCTGGGTTTGTTGAGCATTACGCCTTTGCTATGGAACATAATGGCGACGCGGCAGCATATAGAGACTTTATCGCAGGTCGTAACCTGTATGCGAAACAAGGCGGTTTATACATTGTTGATCAGTCTAATCCGGCAATGACTCGCTCAGAAGATGGTATGTTGAATATCGGTCACGGTGGAAGTGTTAACATCAAAGCAGGTTATCAGACGCTTACTACAGAGATTGCCGGGCAGAAATATCAGATCGTCCACGCAGGAAACGCAGACGAAGTTCTTAATCGTCAGTTTGTTAAGAATGCTGGCGATACAATGACTGGTAAATTGATTATGGATAATGCGTCTATTGTATCAGTTAAGCATGAAGCGATCGCTACTACTGCACCAGCAATTGGTAACATTGGCTTCTGGAACATGCGAGTAACTACCCAAAACATCAAAGAAACCTACCCAGAAAAGAAAAATGGTACATTGATGCAATGGGGTACTGATGAAAACGGCCTTACCCAAATCTGGTCGCCTGATGGTACTCATAAGCATTATATCCGTTCCGGTACAGATGGTCAATGGACCGCATGGGGCGAAATTTACACCAAACAGAACAAGCCTACCGCTCAGGAAATAGGGGCAGTGGTTGCCGAAGGTGGTTTGATGAACTCTATGACGGTTCGTGACTGGATCAAGGTTGGTAATGTTAAAATTATTGCCAATAATCTGACTCGTACCGTAGATTTTATCTGGGAAGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8b3f0ed97bd74d179f342e912baf055a0d84682d193c37f2a3cd76458863c9cf
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2761
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Still something new to discover - new insights into E. coli phage diversity and taxonomy Korf,I.H.E., Adriaennsens,E., Dreiseikelmann,B., Kropinski,A., Nimtz,M., Meier-Kolthoff,J.P., Rohde,M., van Raaij,M. and Wittmann,J. 2019-05-17 — GenBank