Protein

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Genbank accession
UXR08346.1 [GenBank]
Protein name
tail fiber
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,83
Protein sequence
MADRKLTHFKFFYNTPLTDYQNTIHFSSNNERDNYFLNENHFNAIDYKNIPFNFIRDRNMVNLEQMSWQDAQGINYCTFKSDFENRRYYAFVNQIEYVNDHVTRMYLVIDTVMTYTQGNVLSNVQNAFIERQHLPREVYNYLLPSLRNNDDVIKASNKYYLNNYLEQFGGNLVLFQSSADLSKKFGTKKEPNLESSKGITYDYITSPVNLYVMNRKDFNEFMDKMSKYPWITQNFQKIILIPATFINIDDLESVKTQEDIKGLMTLKNEKLSNEWELKELRVPFERLQYMINANQDELKHLVRNEYLTIEIYSWNGDSLLLDAGKITEKTGVKLRTKSIIGYHNEVRIYPVDYNSAPNEKPIQASDNSILIDTGSFLNTAITFDSFAEVPILIDNGLLAQSQQANKQKNAQSNLISSRINNVVGGNDLKSRFYDAVSIGSNLSPTALFSKFNDEYNYYKELRAEYKDLALQPPTVTSSQMGNAFQIANSINGLTMKIGVPAPYDMDNIKRYYFMLGFETNDQAGTPFPIDSWTVCNYLRMRGTYTIDGIDPMLLEQLKVLLETGVRFWHNDGTNNPMAQNVFKNKFRK
Physico‐chemical
properties
protein length:588 AA
molecular weight: 68347,32190 Da
isoelectric point:5,88422
aromaticity:0,12585
hydropathy:-0,52279

Domains

Domains [InterPro]
IPR031772
TAS
5–118
IPR031772
IPR031772
TAS
5–115
IPR031772
DC_0080
STR
87–431
DC_0080
UXR08346.1
1 588
Architecture
TAS
STR
TAS 5-86 | STR 87-431 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_ScaM-V1SC05
[NCBI] 		2983350 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus capitis
[NCBI] 		29388 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UXR08346.1 [NCBI]
Genbank nucleotide accession
OP297179.1 [NCBI]
CDS location
range 7196 -> 8962
strand +
CDS
ATGGCAGATAGAAAACTGACACATTTTAAATTTTTCTATAATACACCACTGACAGATTATCAAAACACAATTCACTTTTCATCAAACAATGAACGTGACAACTATTTTTTAAATGAAAATCATTTTAATGCGATTGATTATAAAAATATTCCTTTTAATTTTATACGTGATAGAAACATGGTGAATCTTGAACAAATGTCATGGCAAGACGCACAGGGGATTAATTACTGTACGTTTAAATCTGATTTTGAAAATAGACGTTATTATGCGTTTGTGAATCAAATTGAGTATGTCAACGACCATGTGACACGAATGTATTTAGTCATTGATACAGTGATGACTTACACACAGGGTAATGTTTTATCAAATGTACAAAATGCGTTTATTGAACGTCAACACTTACCACGTGAGGTCTATAATTATTTGTTACCGTCACTGAGAAATAATGATGATGTTATTAAAGCCAGTAACAAATACTATTTAAATAATTATCTTGAACAGTTTGGTGGTAATCTTGTTTTATTCCAATCAAGTGCTGATTTATCTAAAAAGTTTGGGACTAAAAAAGAACCTAACCTCGAATCTTCAAAAGGGATTACGTATGATTACATTACAAGTCCAGTGAATCTGTATGTGATGAATCGTAAAGACTTTAACGAATTTATGGATAAAATGAGTAAATATCCATGGATTACGCAAAACTTTCAAAAAATTATTTTAATACCTGCTACATTTATTAATATTGATGATTTAGAATCAGTAAAAACGCAAGAAGATATTAAAGGATTAATGACACTTAAAAATGAAAAGTTATCGAATGAATGGGAATTAAAAGAATTACGTGTACCTTTTGAAAGATTACAATATATGATTAATGCTAATCAAGATGAATTAAAACATCTTGTAAGAAATGAATATTTAACAATTGAAATTTATTCATGGAATGGTGACAGTTTATTACTTGACGCAGGAAAAATTACAGAAAAAACAGGGGTTAAGTTAAGAACAAAATCTATTATTGGTTATCATAATGAGGTACGTATTTATCCCGTTGACTATAATAGCGCACCCAATGAAAAACCAATACAAGCAAGTGATAATTCAATATTGATTGATACAGGTTCATTTTTAAATACGGCTATCACGTTTGATAGTTTTGCCGAAGTACCTATTTTAATTGATAATGGATTACTTGCACAATCTCAACAAGCTAACAAACAAAAAAATGCACAAAGTAATTTAATATCTAGCAGAATCAATAATGTTGTGGGTGGTAATGATTTGAAATCAAGATTTTATGACGCTGTAAGCATTGGGTCAAACCTTTCACCAACGGCTTTATTTTCAAAATTTAATGATGAGTATAATTACTATAAAGAATTACGTGCAGAATATAAAGACTTAGCATTACAACCCCCTACTGTGACAAGTTCACAAATGGGAAATGCTTTCCAAATCGCAAATAGTATTAATGGATTAACCATGAAAATCGGTGTACCCGCGCCCTATGACATGGATAATATTAAACGTTATTATTTCATGTTAGGTTTTGAAACGAACGACCAAGCAGGAACACCATTCCCAATTGATTCATGGACGGTATGCAATTATTTAAGAATGAGAGGTACATATACTATTGACGGTATCGACCCTATGCTTTTAGAACAATTAAAAGTATTACTTGAAACAGGTGTCAGATTTTGGCATAACGACGGAACGAACAACCCAATGGCACAAAATGTATTTAAAAATAAATTTAGAAAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
9956be0641b34b162904a9d6f4c0d901a4b011a9f6bdf655063d87588ebd6382
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3777
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
An innovative bacteriophage-based decontamination to control environmental colonization of intensive care units with Staphylococcus capitis: an in vitro proof-of-concept Chavignon,M. and Kolenda,C. 2022-11-16 — GenBank