Protein

View in Explore
Genbank accession
YP_009615838.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MAYTEIAMAVGNSPEILARNVKVMMSSGFQPYGDVQMLSGTLFGMKMAKGTTNNVEDFMVTSDTTIQGLVNMVNRYLAQGWKRFGNAHFEDGAYISALAKGDFASDEGGGSGEAGPQGPVGPQGPAGPAGEAGPQGPQGPTGATGPAGAAGAKGDTGPAGPAGPQGPQGETGEAGPQGPMGPTGATGPAGPKGDKGDAGPVGPAGLTFRGVYDAATAYVKDDVVTFNNSSWFATTAVTGENPDVSDSWELLAAQGAPGPQGATGPAGPTGPAGPAGIQGPQGERGLQGEQGPTGPQGLQGAAGAVGPQGPAGPQGEPGIQGPVGHQGPIGPKGDKGDPGISRTFMKVKTSPDVGTNHMLRLPAPLNNLSVGIRLDSTVLFSIRAWIDEGSTARNIRGNIEGFNNTDNYFNTTVRTAISSSSVTGTALVTGIGEFQRIRPYVFSFYETTTGTAWRVTINLFTVGYVVSDNQDLCIEVVRLDA
Physico‐chemical
properties
protein length:481 AA
molecular weight: 48546,21260 Da
isoelectric point:4,75318
aromaticity:0,06653
hydropathy:-0,31622

Domains

Domains [InterPro]
DC_1122
ATT
3–106
DC_1122 IPR050149 DC_1535
DC_0876
STR
150–288
DC_0876
IPR008160
STR
151–205
IPR008160 IPR036573 DC_0094
IPR003610
CBM
209–251
IPR003610 IPR008160
G3DSA:2.10.10.20
ATT
211–250
G3DSA:2.10.10.20
YP_009615838.1
1 481
Architecture
ATT
STR
ATT
STR
RBD
ATT 3-106 | STR 150-210 | ATT 211-250 | STR 251-375 | RBD 376-481
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage C119
[NCBI] 		1735565 Uroviricota > Caudoviricetes > Drexlerviridae > Rogunavirus > Rogunavirus C119
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009615838.1 [NCBI]
Genbank nucleotide accession
NC_042046.1 [NCBI]
CDS location
range 1246 -> 2691
strand +
CDS
ATGGCTTACACAGAAATTGCTATGGCAGTAGGGAATTCACCTGAAATCTTAGCCAGGAACGTAAAAGTGATGATGTCATCAGGCTTTCAGCCATATGGTGATGTGCAGATGCTAAGCGGCACCCTCTTTGGCATGAAGATGGCGAAAGGAACAACAAACAACGTTGAAGACTTCATGGTTACATCCGACACCACAATTCAGGGGCTAGTTAACATGGTTAACCGATATCTAGCGCAGGGCTGGAAAAGGTTTGGCAATGCTCACTTCGAGGATGGCGCTTATATTTCAGCTCTGGCTAAAGGTGATTTTGCAAGTGATGAAGGAGGGGGTTCAGGTGAAGCAGGTCCACAAGGTCCGGTTGGTCCGCAGGGTCCAGCAGGTCCCGCAGGCGAAGCTGGTCCGCAAGGCCCTCAAGGTCCAACTGGTGCAACTGGCCCAGCAGGTGCGGCAGGCGCCAAAGGTGACACTGGTCCGGCAGGCCCTGCAGGCCCGCAAGGTCCTCAAGGCGAGACTGGAGAAGCTGGTCCACAGGGTCCTATGGGCCCAACAGGTGCAACAGGTCCGGCTGGCCCAAAAGGTGATAAAGGTGATGCAGGTCCAGTTGGTCCGGCAGGCTTGACATTCCGTGGGGTGTACGACGCAGCGACAGCTTACGTTAAAGATGATGTTGTTACATTCAATAACTCCAGCTGGTTTGCTACCACTGCTGTTACCGGAGAGAATCCAGATGTTAGCGATTCCTGGGAATTGCTGGCTGCACAAGGCGCCCCTGGCCCACAAGGAGCAACCGGTCCAGCAGGCCCGACTGGCCCAGCAGGCCCGGCTGGCATTCAAGGTCCTCAGGGAGAAAGAGGCCTTCAGGGTGAGCAGGGTCCGACAGGTCCGCAAGGCTTGCAAGGTGCAGCAGGTGCAGTCGGGCCTCAAGGCCCAGCAGGTCCTCAGGGTGAGCCAGGAATACAGGGTCCTGTTGGCCATCAAGGTCCAATTGGCCCTAAAGGCGATAAGGGAGACCCGGGAATATCAAGAACCTTCATGAAAGTTAAAACATCGCCTGATGTTGGCACTAATCATATGTTAAGACTACCAGCTCCTCTTAACAACCTATCTGTTGGTATAAGGCTTGATTCAACAGTGCTTTTTAGCATTAGAGCCTGGATTGATGAGGGAAGCACTGCCAGGAACATAAGAGGTAATATTGAGGGCTTCAATAATACAGATAACTACTTCAATACAACAGTAAGGACAGCAATATCTTCATCTTCCGTAACTGGAACAGCATTGGTTACTGGCATTGGTGAATTTCAAAGAATAAGGCCATATGTTTTTAGCTTTTATGAAACCACAACAGGAACGGCGTGGAGAGTAACAATAAATCTATTTACAGTCGGTTATGTTGTGAGCGACAATCAAGACCTGTGTATAGAAGTTGTAAGGCTTGATGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
db0c3baf892b4f41906a534e3b6a593614be358ae86db31230e52f10263cb0db
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6401
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Preliminary characterization of a novel lytic bacteriophage as a possible biocontrol agent against multidrug resistant Shiga toxin-producing Escherichia coli (STEC) Amarillas,L. and Leon-Felix,J. 2016-09-13 — GenBank