Protein

View in Explore
UniProt accession
A0A8S5VIA0 [UniProt]
Protein name
Pulmonary surfactant-associated protein D, c-type lectin, alpha-helical coiled
RBP type
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MSENTINIYMGAEDKVNVKDATQIIKLQGPKGDPGPKGEDGVQGPKGEPLRFEELTEEQKLELKGEKGDKGEQGIPGPKGEPFKYSDFTPEQLNALKGPKGDTGEDGEQGPKGEPFKYTDFTEEQLAALKGERGEKGETGERGRKGPQGDNVNLETVAKIKELLLDWNMLLHSNSLEGIMLEYIKAQVAGINFNRDIDLTDPSVQIHDGILEIYYVTTLPFQINDGEVQFMESQVINLPLPSTTGPITIKFYNARMKLMYTKVIEVL
Physico‐chemical
properties
protein length:267 AA
molecular weight: 29543,01930 Da
isoelectric point:4,73193
aromaticity:0,06742
hydropathy:-0,66966

Domains

Domains [InterPro]
DC_0341
STR
11–179
DC_0341
G3DSA:1.20.5.320
STR
27–61
G3DSA:1.20.5.320 DC_2313
IPR050149
Unmapped
29–149
IPR050149
A0A8S5VIA0
1 267
Architecture
STR
RBD
STR 11-179 | RBD 180-267
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Siphoviridae sp. ctsYb1
[NCBI] 		2825696 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAG06497.1 [NCBI]
Genbank nucleotide accession
BK016273 [NCBI]
CDS location
range 3611 -> 4414
strand -
CDS
ATGAGTGAAAATACTATTAATATTTATATGGGTGCAGAAGATAAAGTAAACGTTAAAGATGCAACTCAAATTATTAAATTGCAAGGGCCAAAAGGCGACCCTGGTCCTAAAGGTGAAGATGGAGTACAAGGACCGAAAGGCGAGCCGTTACGTTTTGAGGAATTAACCGAAGAACAAAAACTAGAATTAAAGGGAGAAAAAGGCGATAAAGGCGAACAAGGTATTCCAGGCCCTAAAGGCGAGCCTTTTAAATATTCTGATTTTACACCGGAACAGCTTAATGCACTCAAAGGCCCTAAAGGTGATACTGGGGAAGACGGAGAACAAGGCCCTAAGGGCGAGCCGTTTAAGTACACTGACTTTACTGAAGAGCAGTTAGCTGCCTTGAAAGGTGAACGAGGAGAAAAAGGGGAGACTGGTGAGCGTGGCCGTAAAGGTCCGCAAGGTGATAATGTCAATCTTGAAACCGTTGCTAAAATTAAAGAACTATTATTGGATTGGAACATGCTACTTCATAGCAATAGTCTTGAAGGTATTATGCTTGAATACATTAAGGCACAAGTTGCGGGAATAAATTTTAATAGAGATATTGATTTAACAGATCCGAGTGTACAAATTCATGACGGCATCTTAGAAATCTATTATGTTACAACGTTACCGTTCCAAATCAACGATGGCGAAGTCCAATTCATGGAAAGTCAGGTAATAAACCTACCTTTACCATCTACAACAGGACCAATCACAATTAAATTCTATAATGCTCGAATGAAGTTGATGTACACAAAAGTTATAGAAGTATTATAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0031012 extracellular matrix Cellular Component IEA:TreeGrafter (UniProt)
GO:0005615 extracellular space Cellular Component IEA:TreeGrafter (UniProt)

Tertiary structure

PDB ID
375c1ad0b6a15d7139858d1a1fe318946122db7e49cd5149f623a7ffa356077a
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6322
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50