Protein

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Genbank accession
YP_010095107.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MSQNNLNHYSDLSKYKIFEPANTSWPEDVKDVQSALALIGDWARTDVGLPNATESVVGVSRLATQQEVNDGEIDDAIVTPKTLKVRLGNPVATTTVLGLTQYATNAEAAALTLDTRSITAASLGYVFNNVTANVSRFGTVKLTSSAQAQAGTDDTSATSPARVKEMIAKFAPVAPSYSTANETTLGLTRLSTIGQTQQGTLRDGFAVSPYSFVNSRANQTLVGTTRMATLSEVNAGNDTTIAVSPSTLMNARGAINKYGVVKLSNSYNGDGTTALASTAPVVYNNLQINGHPLTGNFNITSDDVWCWNRQQSDDRYLFKNQGGNWSRSYAANYVQGGNWMSYGTDVPVNTKMTIVISVKFQRNNDGETNRFFNFDVRVNGVTRFSDGINVYNSKGGKSGHSWRFEDYGTRHYETFDIPPGALIQIVPTNTYLVDYYGTSFTLSN
Physico‐chemical
properties
protein length:444 AA
molecular weight: 48146,67230 Da
isoelectric point:6,12647
aromaticity:0,09459
hydropathy:-0,35225

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010095107.1
1 444
Domain Start End Length (AA) Confidence
N-terminal 1 278 278 0,9030
Central domain 279 433 156 0,1128
C-terminal 434 444 10 0,8851
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-278
Central
279-433
C-terminal
434-444

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage Cronus
[NCBI] 		2163633 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Risoevirus
Host Erwinia amylovora
[NCBI] 		552 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010095107.1 [NCBI]
Genbank nucleotide accession
NC_055743 [NCBI]
CDS location
range 89147 -> 90481
strand +
CDS
ATGTCACAAAATAACTTAAATCACTACAGTGACTTATCAAAATATAAAATCTTTGAGCCGGCCAATACTTCTTGGCCGGAAGATGTCAAAGATGTACAATCTGCGCTAGCATTAATCGGTGATTGGGCTCGTACAGACGTAGGTCTTCCAAATGCGACAGAATCAGTTGTAGGTGTTTCTCGATTAGCTACTCAACAGGAAGTTAATGATGGAGAAATTGATGATGCAATCGTTACTCCTAAAACATTAAAAGTTCGTCTTGGAAATCCAGTTGCAACTACAACAGTTCTTGGATTAACACAATACGCTACTAATGCTGAAGCGGCTGCATTAACTCTCGATACTCGTTCTATTACTGCAGCTTCTTTAGGATATGTGTTTAATAACGTAACTGCAAATGTAAGTCGTTTTGGTACAGTTAAATTAACGAGTTCAGCTCAGGCACAAGCAGGAACAGATGACACTTCTGCTACTTCTCCAGCTCGTGTAAAAGAAATGATTGCTAAATTTGCTCCAGTGGCGCCATCATATTCTACTGCAAACGAAACTACATTGGGATTAACCAGATTATCTACTATCGGTCAAACTCAACAAGGAACACTGCGTGATGGATTTGCTGTATCTCCATATTCATTTGTAAATTCTAGAGCGAATCAAACTCTGGTCGGTACAACTCGTATGGCTACATTATCAGAAGTCAATGCAGGGAATGATACTACTATAGCAGTTTCTCCATCTACATTAATGAATGCTAGAGGAGCAATTAATAAGTATGGTGTAGTTAAATTATCAAATTCATATAACGGTGATGGTACTACTGCACTTGCATCTACTGCACCTGTAGTTTATAACAACCTTCAAATTAATGGACACCCACTAACTGGAAACTTTAATATAACTTCTGACGATGTTTGGTGTTGGAATAGACAGCAATCAGATGATCGCTATCTTTTTAAAAATCAGGGTGGAAACTGGTCCCGTAGCTACGCAGCTAATTATGTTCAGGGCGGAAACTGGATGTCATACGGAACTGATGTTCCCGTTAATACTAAAATGACAATTGTTATATCAGTTAAATTCCAGCGAAATAATGATGGCGAAACAAATAGATTCTTTAATTTTGATGTTAGAGTAAATGGCGTCACCAGATTTTCTGATGGTATAAATGTTTACAATAGCAAAGGCGGTAAGTCTGGACATTCATGGCGCTTCGAAGATTATGGAACTCGCCATTATGAAACATTTGATATTCCGCCAGGGGCTCTTATTCAGATTGTTCCTACAAATACATATCTAGTTGATTATTATGGTACGTCTTTCACTTTAAGTAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0113aa0853c5d3e1c33b7d977dfd2e722c5d44743d6e8f08d93c7e0461510d4b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7072
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy in agriculture - a green tech approach to combat plant pathogenic bacteria Carstens,A.B., Djurhuus,A.M. and Hansen,L.H. 2021 — GenBank