Protein

View in Explore

Genbank accession

QXN67718.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence Phold

Probability 1,00

Evidence RBPdetect

Probability 0,78

Evidence RBPdetect2

Probability 0,96

Protein sequence

MSIDLKEVRAGFNTSSINSNFEAIEKEFKDNTLHTDVGNNQMEQELDMNSNRIINLPSPILPTEPLRLEDLKRFEGSDVSGVVPTVTRTVGDAVRTRFPTGLDFIADAKSIQVYINGERQFPDVDYTTIDHDVEFINKTPDTDEYVEIFAYAPLTVQGPEGPRGPTGPQGPEGPQGPQGQVGPQGIQGVQGPQGVVGPTPRAEWNGSQVRFSLKVDEDGNVLEWGGWQDLRGPRGATGPQGIQGPIGPSPNYQWDGTRIRFQYTKDGQQVWGEWVDLVGPQGPLGPIGPQGPKGDRGPKGDKGDQGDRGIRGLTGPVGPQGPQGPKGDKGDTGSQGPQGIQGQMGPSPASEWLGSKLRFQQPDGSWGEYSDLLGPQGPVGPQGPEGQKGDKGDTGPMGPKGDTGQRGLTGPQGPKGDTGPVGPKGDTGSRGPQGLQGPMGPMPNHNWVGNKLQFELPSGSMGTLVDLTGPQGPIGPVGPQGPVGPQGKTGPQGPQGDRGDRGLTGPEGPQGPVGPRGATGPQGKTGPQGPRGIMGPMPNHAWSGTRLRWENPDGTWGGWVNLQGPQGPIGPKGEQGVKGERGDSFNINAMGLFSQRSHYDDRPSGFTFFATDYKDPDSPAKGALFIKQSNNNADWSDAYPFGQGPQGEQGPRGPEGPQGPQGLRGPTGAKGEQGEQGPEGPQGPIGPVGPQGPQGERGPVGPKGPKGDKGDTGDRGPVGPKGPVGDKGEDGKDGAVGPQGPEGKRGPMGPQGPQGEIGPTGPQGPQGEVGPRGPQGIQGEKGEKGDKGDRGDVGPRGPQGPKGETGDKGETGDTGPIGPMGPQGLRGPEGPKGATGDTGPTGPQGPIGPVGPRGPQGEKGEKGEKGDKGDQGDVGPRGPQGPQGLRGPQGDKGEDGAVGPQGPQGERGPQGEKGATGDRGPVGPQGATGEQGPRGPVGPKGPQGDRGITGPQGPQGERGPQGVEGPPGPRGAQGPIGKPGPQGPRGLTGPTGAPGPKGPRGDRGERGSREWYIATTGTSWSTALRDKVNPRPVVYDVVIQYNSSKGYSESQVYRGSGKWELVERVRNFTIEYMNGVRADKLKVGSASEIGSTTISAGQINSGPNAQSIDLGKFPFRLPADTSRVLVGGSTYFNITNTRRSKDNVEVRWVLYLNGKIAASGPWLRKEVDNQGVTDFDITTSWVAPVNSLGRTVSAQLGFEGRIQRGIGRWSNLRITRNASALSWTALKA

Physico‐chemical properties

protein length:	1228 AA
molecular weight:	127036,20300 Da
isoelectric point:	5,98318
aromaticity:	0,05375
hydropathy:	-0,95301

Domains

Domains [InterPro]

DC_2003
STR
1–336

DC_2003 DC_1453 IPR050938 IPR008160 DC_0898

IPR008160
STR
279–337

IPR008160 IPR008160 DC_0341 IPR008160 IPR008160 DC_0620

IPR008160
STR
475–530

IPR008160 DC_1284 DC_0620 IPR008160

DC_1341
STR
683–756

DC_1341 DC_0620

QXN67718.1

1 1228

Architecture

STR

RBD

STR 1-337 | STR 349-1008 | RBD 1009-1228

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_2003	STR	DC_2003	1	336	Novel HMM	DC_2003	Central	Low	Positional only	29 proteins / 29 hits
IPR008160	STR	DC_0536	279	337	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1453	STR	DC_1453	349	464	Novel HMM	DC_1453	Central	Low	Positional only	102 proteins / 102 hits
IPR008160	STR	DC_0536	374	425	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_0341	STR	DC_0341	446	622	Novel HMM	DC_0341	Central	Low	Positional only	62 proteins / 62 hits
IPR050938	Unmapped	-	469	926	InterPro	Collagen and Collagen-like Structural Proteins	-	-	-	-
IPR008160	STR	DC_0536	475	530	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1284	STR	DC_1284	596	699	Novel HMM	DC_1284	Central	Low	Positional only	28 proteins / 28 hits
IPR008160	STR	DC_0536	644	698	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1341	STR	DC_1341	683	756	Novel HMM	DC_1341	Central	Low	Positional only	76 proteins / 76 hits
IPR008160	STR	DC_0536	731	789	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_0620	STR	DC_0620	742	836	Novel HMM	DC_0620	Central	Low	Positional only	205 proteins / 205 hits
DC_0620	STR	DC_0620	818	897	Novel HMM	DC_0620	Central	Low	Positional only	205 proteins / 205 hits
IPR008160	STR	DC_0536	840	897	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_0620	STR	DC_0620	875	957	Novel HMM	DC_0620	Central	Low	Positional only	205 proteins / 205 hits
IPR008160	STR	DC_0536	950	1008	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_0898	RBD	DC_0898	1009	1228	Novel HMM	DC_0898	C-terminal	Low	Positional only	9 proteins / 9 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Vibrio phage VP41s3 [NCBI]	2836076	No lineage information
Host	Vibrio parahaemolyticus [NCBI]	670	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Genbank protein accession

QXN67718.1 [NCBI]

Genbank nucleotide accession

MZ073369.1 [NCBI]

CDS location

range 33419 -> 37105
strand -

CDS

ATGAGTATTGACTTAAAAGAAGTCAGAGCTGGTTTTAATACTTCATCTATTAACTCCAACTTTGAAGCAATTGAAAAAGAGTTTAAGGACAACACTCTGCACACAGATGTAGGCAACAACCAGATGGAACAAGAATTGGATATGAACTCCAATCGTATCATTAACCTTCCATCTCCAATACTGCCTACTGAACCACTACGCTTGGAAGACCTTAAACGGTTTGAAGGTAGTGATGTGTCAGGTGTAGTTCCAACAGTAACACGTACAGTAGGTGATGCAGTACGTACACGTTTTCCAACAGGCTTGGACTTTATTGCAGATGCCAAGTCTATTCAAGTGTACATCAACGGTGAACGCCAATTTCCAGATGTAGACTACACAACCATCGACCACGACGTAGAGTTTATCAACAAGACTCCAGATACAGATGAGTATGTGGAGATTTTTGCGTATGCGCCACTAACAGTCCAAGGACCAGAAGGTCCAAGAGGACCGACCGGACCGCAAGGTCCAGAGGGACCACAGGGTCCCCAAGGACAAGTTGGTCCGCAGGGTATTCAGGGTGTACAAGGTCCGCAGGGTGTAGTAGGTCCAACACCACGTGCAGAATGGAATGGTTCCCAAGTACGCTTCTCTCTTAAAGTAGATGAAGATGGTAATGTCCTAGAATGGGGTGGCTGGCAAGACCTACGTGGTCCACGTGGGGCAACAGGCCCACAAGGTATTCAAGGGCCTATTGGCCCCTCTCCAAACTACCAATGGGATGGAACACGAATCCGCTTCCAATACACCAAAGATGGCCAACAAGTTTGGGGTGAATGGGTAGACTTAGTAGGTCCACAAGGACCGTTAGGCCCAATTGGACCGCAGGGACCTAAAGGCGACCGTGGCCCTAAAGGGGACAAGGGAGACCAAGGCGATAGAGGTATCCGAGGTCTTACAGGTCCAGTCGGTCCCCAAGGACCGCAGGGACCAAAGGGAGACAAGGGTGATACTGGCTCCCAAGGACCGCAGGGCATCCAAGGTCAAATGGGTCCGTCTCCAGCTTCAGAATGGTTAGGAAGCAAACTAAGATTCCAACAACCTGATGGTTCATGGGGTGAGTACTCTGACTTACTCGGTCCGCAAGGACCTGTTGGTCCACAAGGACCAGAAGGACAAAAAGGTGATAAAGGTGATACTGGTCCTATGGGACCTAAAGGAGACACCGGACAAAGAGGTCTAACTGGACCGCAAGGTCCTAAAGGAGATACAGGTCCTGTTGGTCCTAAAGGAGATACAGGTTCTAGAGGACCGCAAGGTCTACAAGGCCCTATGGGTCCTATGCCAAACCATAACTGGGTAGGTAACAAACTCCAATTCGAGTTACCTAGTGGCAGTATGGGTACATTAGTTGACTTAACCGGACCACAGGGTCCTATTGGTCCAGTAGGTCCACAAGGCCCTGTAGGACCGCAAGGTAAGACAGGTCCACAGGGTCCGCAGGGCGACCGAGGAGACAGAGGCTTGACTGGTCCAGAAGGCCCTCAAGGTCCAGTAGGACCAAGAGGTGCTACAGGTCCTCAAGGTAAAACGGGTCCACAAGGACCACGTGGTATCATGGGGCCAATGCCTAACCACGCTTGGAGTGGTACTCGCCTTCGTTGGGAAAATCCAGATGGTACTTGGGGAGGTTGGGTAAATCTTCAAGGTCCGCAAGGTCCTATTGGACCGAAGGGTGAGCAGGGTGTTAAAGGCGAACGGGGTGACTCATTCAACATTAATGCTATGGGTTTATTCTCACAACGTTCTCATTATGATGACCGTCCTTCTGGATTTACTTTCTTTGCTACCGACTATAAAGACCCGGACTCTCCAGCTAAGGGTGCTTTGTTCATTAAACAATCCAATAACAACGCTGATTGGTCAGATGCGTACCCATTTGGTCAAGGTCCTCAAGGGGAACAAGGTCCCCGTGGACCGGAAGGCCCACAAGGGCCGCAAGGTTTAAGAGGCCCAACTGGTGCTAAAGGTGAGCAAGGCGAACAGGGACCGGAGGGTCCTCAAGGCCCAATCGGTCCAGTAGGCCCACAAGGGCCACAAGGCGAAAGAGGACCAGTAGGTCCTAAAGGACCGAAAGGCGATAAGGGTGACACTGGTGACAGAGGACCTGTGGGTCCGAAAGGCCCTGTCGGAGATAAAGGTGAGGACGGTAAAGATGGTGCAGTTGGTCCTCAAGGTCCCGAAGGTAAGAGAGGCCCGATGGGTCCCCAAGGACCTCAAGGTGAAATTGGTCCTACAGGCCCACAAGGACCTCAAGGTGAAGTAGGTCCTCGTGGTCCCCAAGGTATTCAAGGTGAGAAGGGGGAAAAAGGCGACAAAGGCGACCGTGGGGACGTTGGTCCGAGAGGCCCGCAGGGACCTAAAGGTGAAACAGGTGACAAAGGGGAAACAGGTGATACAGGACCAATCGGTCCTATGGGTCCCCAAGGTCTACGTGGACCAGAGGGACCTAAAGGTGCAACTGGTGATACCGGCCCTACCGGTCCGCAAGGACCAATTGGCCCAGTGGGACCTCGTGGCCCACAGGGTGAAAAAGGTGAAAAGGGCGAGAAAGGTGATAAAGGGGACCAAGGTGATGTCGGCCCACGTGGTCCGCAAGGTCCACAGGGCTTACGTGGTCCTCAAGGTGACAAAGGTGAAGACGGTGCTGTAGGTCCGCAGGGACCACAGGGTGAACGTGGACCTCAAGGTGAGAAAGGTGCAACGGGCGACCGTGGCCCAGTGGGTCCACAGGGTGCAACAGGTGAGCAAGGTCCACGTGGTCCAGTCGGTCCTAAAGGACCACAAGGGGACCGTGGTATTACCGGACCACAAGGCCCACAAGGTGAGCGTGGTCCACAAGGTGTTGAGGGACCTCCTGGCCCTCGTGGTGCACAAGGCCCAATTGGTAAACCTGGCCCTCAAGGTCCAAGGGGTTTGACTGGTCCTACTGGTGCACCAGGCCCTAAAGGTCCTCGTGGTGACAGGGGTGAACGTGGTTCACGTGAATGGTATATTGCTACAACAGGCACAAGTTGGAGTACAGCATTACGTGATAAAGTTAACCCACGTCCAGTGGTATATGACGTAGTAATTCAATATAACTCATCAAAAGGTTATAGTGAATCACAAGTATACCGAGGCTCAGGTAAGTGGGAACTAGTTGAGAGAGTTAGGAACTTCACCATTGAATATATGAATGGTGTTCGTGCTGATAAACTTAAAGTTGGTAGTGCATCTGAAATTGGGTCAACTACTATAAGTGCAGGACAGATTAACTCTGGCCCTAACGCGCAATCTATCGACCTAGGCAAATTCCCGTTTAGATTACCTGCTGATACCAGTCGTGTTCTAGTTGGCGGTTCTACTTACTTCAATATTACCAACACACGTAGAAGTAAAGATAATGTAGAAGTCAGATGGGTACTATATCTAAATGGTAAGATTGCCGCTTCTGGTCCTTGGTTAAGAAAAGAAGTAGATAACCAAGGGGTAACAGACTTCGATATTACAACAAGTTGGGTTGCTCCAGTAAACTCCCTAGGACGCACTGTTAGTGCGCAACTAGGGTTTGAGGGACGTATTCAACGTGGTATCGGTAGATGGAGTAACTTACGTATTACACGAAACGCTAGTGCTTTGTCTTGGACGGCTTTGAAAGCATAA

Genome Context

Tertiary structure

PDB ID

97ab3e55c1dcccd2293443bfb83b8f99a5405871257ec37e6f2c6e4db85a6a1d

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6146

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence