Protein

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Genbank accession
AAN12338.1 [GenBank]
Protein name
ORF39
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAEQYLHGAEVVEIDNGARPIRTAQSGVIGLVGTAPDADATAFPLNTPVLIAGSRREAAKLGAGGTLPQAIDGIFDQTGAVVVVIRVDEGVDSAATQSNVIGKVDADTEQYTGILALLSAENTVKVQPRILIAPGFSNQKAVADQLVSVADTAAWLCHSGWSNTTDAAAITYRELFGSRRCEVVDPWYKVWDVETSAHIIQPPSARHAGVMAKVHNTLGFWWSNSNQEILGIDGLCRPVDFKLDDPTCRANLLNAKEVTTTIQQNGFRVWGDRTCSADSKWAFKNVVITNDMIADSLVRNHLWAVDRNITKTYVEDVTEGVNNYLRHLKNIGAIAGGECWVDPELNSPDQIQQGKVYFDYDFSAYAPAEHITFRSHMVNGYLTEVV
Physico‐chemical
properties
protein length:386 AA
molecular weight: 42028,70480 Da
isoelectric point:4,99685
aromaticity:0,08031
hydropathy:-0,11891

Domains

Domains [InterPro]
IPR054564
TAS
27–87
IPR054564 IPR052042
IPR054564
TAS
27–95
IPR054564 IPR035089 IPR020287
G3DSA:3.40.50.11780
STR
43–232
G3DSA:3.40.50.11780
AAN12338.1
1 386
Architecture
TAS
STR
TAS
TAS
TAS 27-42 | STR 43-232 | TAS 233-275 | TAS 277-376 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAN12338.1
1 386
Domain Start End Length (AA) Confidence
N-terminal 1 368 368 0,7367
Central domain 369 375 8 0,0018
C-terminal 376 386 10 0,9944
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-368
Central
369-375
C-terminal
376-386

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VHML
[NCBI] 		207597 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio harveyi
[NCBI] 		669 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAN12338.1 [NCBI]
Genbank nucleotide accession
AY133112 [NCBI]
CDS location
range 30452 -> 31612
strand +
CDS
ATGGCTGAACAATACCTACACGGCGCAGAAGTCGTCGAAATTGATAATGGGGCCCGCCCCATCCGCACCGCTCAAAGTGGCGTGATTGGTTTGGTGGGGACGGCACCGGATGCCGATGCCACCGCCTTTCCTCTGAATACGCCGGTACTGATCGCCGGTAGCCGCCGAGAAGCGGCCAAGCTGGGCGCAGGTGGTACATTGCCACAGGCAATTGATGGCATTTTTGACCAGACTGGCGCAGTGGTGGTGGTGATTCGCGTGGATGAGGGCGTGGATAGCGCGGCCACTCAATCCAACGTGATCGGCAAAGTGGATGCCGACACCGAGCAGTACACTGGCATTTTGGCTCTGCTGTCTGCCGAGAACACCGTCAAGGTGCAGCCTCGCATTTTGATTGCCCCTGGTTTCTCAAACCAAAAGGCAGTCGCTGACCAGCTGGTGAGCGTAGCCGATACAGCTGCGTGGCTATGTCATTCTGGATGGTCCAACACTACCGATGCCGCCGCGATTACCTACCGTGAGCTGTTCGGCAGTCGCCGCTGTGAAGTGGTGGACCCTTGGTACAAGGTGTGGGATGTGGAGACCAGTGCTCATATTATCCAGCCGCCTTCGGCTCGCCATGCTGGCGTTATGGCGAAAGTCCACAATACTCTGGGTTTCTGGTGGTCCAACTCTAACCAGGAAATCCTTGGCATTGATGGCCTGTGCCGTCCGGTGGACTTCAAGCTGGACGACCCGACCTGTCGTGCCAACCTGCTGAACGCGAAGGAAGTGACCACGACCATTCAGCAAAATGGTTTCCGTGTCTGGGGTGACCGCACTTGTTCTGCCGACTCTAAGTGGGCATTCAAGAACGTGGTCATTACTAACGACATGATCGCGGACAGCCTGGTTCGCAACCACCTGTGGGCGGTTGACCGCAACATCACCAAGACCTACGTCGAAGACGTGACGGAAGGGGTGAATAACTACCTGCGCCACCTCAAAAACATCGGTGCGATTGCCGGTGGTGAGTGCTGGGTGGACCCGGAGCTGAACAGCCCCGACCAAATTCAACAGGGTAAAGTCTACTTCGATTATGACTTTAGCGCCTACGCGCCTGCAGAGCACATCACGTTCCGCAGCCACATGGTTAACGGCTATCTGACGGAGGTTGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c122780afe2c6c18ab7ce074fb34a3e17dfcdfd70be4a88c8a08689c980f6102
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9321
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete nucleotide sequence of the Vibrio harveyi bacteriophage VHML Oakey,H.J., Cullen,B.R. and Owens,L. 2002 12452967 GenBank