Protein

View in Explore
Genbank accession
WPJ21343.1 [GenBank]
Protein name
tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARPFEGALNDLLQGVSQQVPRERVAGQCSAQVNMLSDPVTGIRRRPGSLFVSVHDFGPIGEGDALYTQYLERGADGRHLVINTNTGGWWLLDREAKNIVSEGNLSYLLAADRRSIQTTSMGGVTYILNTEKRPSATTDNSDKKDPKTTGFYFVKSGAFSKEYDISVVWSEGSQTVTYTTPDGTTAGDADQSVPEAVARKLVEELIAVGVDFAVRVGPYIYFELITGTDLKITSTSGSPYVGYSNQSQVNLETDLPARLHPSADGALCAVGQSERALVWYRYSSEKGVWLESGDYNSVTAISVDVPYKIVDDNMEQHIMEGRLAGDDLTNPAPTFLEERRITGIGTFQGRLVLLSGAYVCMSATGEPDRFFRSTVSSLDPTDRIDIASGSAQNSVFRQALQFNKDLILLGDSTQAVVPSLQQLLAPDNASVVLTSDLACNAFVAPVTTSQTLMYPAPRSEAFSAVLELVPSQYTSSQYVSQDVTTHIPRYIEGEARFMQSASAANIVLMATTGDNRQVIVHEYHFTSQGKVHQAWHKWVFPYRVASLHFARDRVVLFAADDAGSTDKITISTIDPKQGGVTFDVDRLPHLDSMSIVPVNDGKGIVPIYMRPWVYEGKLTGSVATGALASEEVAIDVDEVSWEFTVEPGFKDSQIYLGFRYESLFAPTPPMLKDQNDTLISTAPVRLLRYELTTRNTGEFDVRIVDPTIGLDYSNSKTSLVFGTDDVQLNQALVSDLARVPVPCRSNAQATEMYLSTDGTQDMNILEIEYIIRYNQRRRRV
Physico‐chemical
properties
protein length:780 AA
molecular weight: 85742,14290 Da
isoelectric point:4,88022
aromaticity:0,08718
hydropathy:-0,21141

Domains

Domains [InterPro]
DC_0058
STR
1–780
DC_0058
IPR058003
TTP
9–780
IPR058003
WPJ21343.1
1 780
Architecture
STR
STR 1-780
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPJ21343.1
1 780
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,9916
Central domain 143 341 200 0,0604
C-terminal 342 780 438 0,1969
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-341
C-terminal
342-780

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VP17802
[NCBI] 		3093941 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPJ21343.1 [NCBI]
Genbank nucleotide accession
OR726634 [NCBI]
CDS location
range 2670 -> 5012
strand +
CDS
ATGGCTCGACCATTTGAGGGTGCATTGAATGACCTGCTGCAAGGTGTGTCCCAACAAGTTCCACGTGAGCGTGTGGCTGGACAATGTTCTGCACAGGTTAACATGCTGTCCGACCCGGTAACAGGTATCCGCCGTCGTCCCGGTAGCCTGTTCGTGAGTGTGCACGATTTCGGCCCGATTGGTGAGGGTGACGCGCTGTACACGCAGTATCTCGAACGAGGTGCTGATGGACGACACTTAGTAATCAACACCAACACAGGCGGCTGGTGGCTCTTAGACCGTGAGGCTAAGAACATCGTGAGTGAGGGTAACTTGTCTTACCTCCTAGCGGCTGACCGTCGCAGTATCCAAACTACCAGTATGGGGGGTGTCACGTACATTCTTAACACTGAGAAGCGTCCGTCTGCAACGACTGACAACTCTGACAAGAAAGACCCGAAGACAACAGGCTTCTACTTCGTCAAGAGTGGTGCATTCAGTAAAGAATACGATATTTCCGTAGTGTGGTCTGAGGGTAGCCAAACCGTGACATACACCACACCTGATGGTACAACCGCAGGTGACGCTGACCAATCTGTTCCCGAGGCAGTTGCACGTAAACTTGTGGAAGAACTAATTGCAGTCGGTGTGGACTTCGCTGTGCGTGTTGGCCCGTATATTTACTTCGAGCTAATCACAGGTACTGACCTTAAAATCACAAGTACATCTGGTTCGCCTTACGTTGGCTACTCAAACCAATCACAGGTAAACCTAGAGACTGACCTCCCTGCGCGTCTGCACCCGTCTGCTGATGGTGCGTTGTGCGCTGTAGGTCAATCAGAGCGTGCGCTTGTGTGGTATCGTTACAGTTCCGAAAAGGGTGTTTGGTTGGAATCTGGTGACTACAACTCTGTGACCGCTATTAGCGTGGATGTGCCTTATAAGATTGTCGATGACAACATGGAGCAACATATCATGGAGGGGCGTCTCGCAGGTGACGACTTAACTAACCCTGCACCGACATTCCTTGAAGAACGCCGCATCACTGGTATCGGTACGTTCCAAGGTCGCTTAGTGCTTCTGTCTGGTGCGTACGTCTGTATGAGTGCCACTGGTGAACCAGACCGTTTCTTCCGCTCTACCGTGAGTTCCCTTGACCCAACAGACCGTATTGATATTGCATCCGGTTCGGCTCAGAACTCAGTGTTCCGCCAAGCATTACAGTTCAACAAGGACTTGATTCTACTTGGTGACAGTACACAAGCGGTAGTACCATCCCTGCAACAGTTACTCGCGCCTGATAACGCAAGCGTGGTGTTGACCTCAGATTTGGCCTGTAATGCGTTTGTAGCACCTGTTACAACCTCACAGACCCTGATGTACCCTGCACCTCGAAGCGAAGCATTCAGTGCAGTTCTAGAGCTTGTACCGTCACAGTACACATCGTCTCAGTACGTATCTCAAGACGTTACGACTCACATCCCTCGTTACATTGAGGGTGAGGCTCGTTTCATGCAGAGTGCGAGTGCTGCGAACATCGTACTAATGGCAACTACTGGAGACAACCGTCAGGTGATTGTTCATGAGTACCACTTCACAAGTCAAGGTAAAGTGCACCAAGCATGGCACAAATGGGTATTCCCGTATCGTGTCGCTAGTCTACACTTTGCGCGTGACCGTGTTGTGTTGTTTGCCGCAGATGATGCTGGTAGCACTGACAAAATCACTATCTCAACCATCGACCCTAAGCAGGGTGGTGTGACGTTTGATGTTGACCGCTTACCCCACCTAGACTCGATGAGCATTGTGCCCGTCAATGATGGTAAGGGTATCGTGCCAATCTACATGCGTCCGTGGGTATATGAGGGTAAGTTGACTGGTTCTGTTGCTACAGGCGCGTTAGCGTCTGAGGAAGTGGCTATTGATGTGGACGAGGTTTCATGGGAATTTACTGTAGAGCCGGGTTTCAAAGACTCGCAAATCTACTTAGGCTTCCGCTATGAGTCGCTGTTTGCACCAACGCCGCCTATGCTGAAAGACCAGAACGATACTCTAATCAGTACTGCTCCGGTTCGACTGTTGCGTTATGAGTTAACAACTCGAAATACAGGTGAATTCGATGTACGCATCGTTGACCCTACTATCGGGTTAGATTACTCAAACAGCAAAACCAGCCTAGTGTTCGGCACTGACGACGTTCAGTTGAACCAAGCTCTAGTGTCTGACTTGGCACGTGTCCCTGTACCGTGTCGAAGCAATGCGCAGGCCACTGAAATGTACTTGAGTACTGACGGTACACAGGATATGAACATTCTGGAAATTGAATATATCATTCGTTACAACCAACGCCGACGTCGCGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c5d2b9be8f4d99da1fa3c1af32537b1015165fd50141ea0f379280c434ab4756
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3140
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of Vibrio phage Thung,T.Y. 2025-06 — GenBank