Protein

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Genbank accession
YP_010719845.1 [GenBank]
Protein name
tail collar protein
RBP type
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MANFFPRFSTKWAVNNGSLETPTDGQAEQGFIYLNNDPPTTALHDQLFQWLDEKDNYLFALINAAVVERTGAALTETDVDALKNAISLYATVSKSGVLQIASQAEVQANTPSAVKAVTMSNIGWLVATTLRAGIAKLATTEQAAARNDNTTIITPLLLGQEIAKIVTIPPGMYGSFPMTSLPAGWLLCNGAVLVRATYPELFAAIGTTYNTGGELATEFRLPDRRGLFPRALDLGRGIDASRALGPTQQSHMTASHAHTASAAAAGGHNHTGTTAAGGGHTHTASTAGAGGHNHTGTTAANNVGHTHTFSGTTAGHSVNHTHTFSGTTSTIGDHTHTAPRAQNNNVGGGSPNFTTANLLNGTTAPTNPAGAHSHTYSGTTAGANVSHTHTYSGTTSAQSANHTHTVTVTTVGDHAHTVTVAAAADHTHTFTASTVADHTHTITVNAAGGIETRPHNFAEVVAIHI
Physico‐chemical
properties
protein length:465 AA
molecular weight: 48038,26020 Da
isoelectric point:6,43670
aromaticity:0,05806
hydropathy:-0,18452

Domains

Domains [InterPro]
DC_1413
STR
5–315
DC_1413
SSF88874
STR
162–317
SSF88874
IPR037053
ATT
163–225
IPR037053
IPR011083
ATT
175–229
IPR011083
YP_010719845.1
1 465
Architecture
STR
ATT
STR
STR 5-162 | ATT 163-229 | STR 230-317 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage MiCath
[NCBI] 		3003729 Uroviricota > Caudoviricetes > Queuovirinae > Micathvirus micath >
Host Pseudomonas putida S12
[NCBI] 		1215087 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas putida

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010719845.1 [NCBI]
Genbank nucleotide accession
NC_072502 [NCBI]
CDS location
range 40831 -> 42228
strand -
CDS
ATGGCAAACTTCTTCCCGCGTTTCTCTACCAAGTGGGCGGTGAACAACGGCTCGCTTGAAACGCCAACCGACGGCCAGGCTGAACAGGGTTTTATTTACCTGAACAACGACCCGCCCACCACAGCACTTCATGACCAGTTGTTCCAATGGCTGGATGAGAAGGACAACTATCTGTTCGCTCTCATTAACGCCGCCGTCGTGGAGCGTACCGGTGCCGCGCTTACCGAAACCGACGTCGACGCGCTCAAGAATGCCATCTCCTTGTACGCCACTGTTAGCAAGAGCGGCGTTCTTCAGATTGCCAGTCAAGCGGAAGTGCAGGCAAACACCCCGAGCGCTGTCAAAGCAGTTACGATGAGCAACATCGGCTGGCTTGTGGCTACCACCCTGCGCGCAGGTATTGCCAAGCTCGCCACTACCGAACAGGCTGCCGCACGCAACGACAACACCACCATCATCACTCCGCTGTTGCTGGGTCAGGAAATTGCCAAGATTGTCACCATCCCGCCAGGGATGTATGGCTCGTTCCCGATGACTTCTCTTCCTGCTGGGTGGCTGCTGTGTAACGGTGCCGTGCTGGTACGGGCAACCTACCCGGAATTGTTCGCGGCTATCGGTACAACCTACAACACTGGCGGTGAACTGGCAACCGAGTTCAGACTTCCGGACCGTCGTGGCTTGTTCCCGCGTGCATTGGACCTTGGGCGCGGCATTGACGCCAGCCGTGCGCTTGGCCCTACTCAGCAAAGCCATATGACTGCCAGCCACGCGCACACAGCGAGCGCTGCTGCTGCTGGCGGACATAACCATACCGGCACCACGGCTGCGGGTGGCGGTCACACGCACACGGCTAGCACGGCGGGTGCAGGTGGCCACAACCACACGGGCACCACTGCCGCCAACAACGTCGGGCACACTCATACGTTCTCGGGTACAACGGCAGGGCATAGCGTCAACCATACGCACACGTTCTCGGGCACCACCAGCACCATCGGGGATCACACCCACACAGCGCCACGGGCTCAGAACAACAACGTCGGCGGCGGCTCCCCGAACTTCACTACCGCGAACTTGCTGAACGGCACCACTGCCCCGACCAACCCTGCCGGCGCGCACTCGCACACGTACAGCGGCACGACTGCTGGTGCCAACGTGAGCCACACCCACACGTACAGCGGCACTACTTCGGCTCAGAGTGCAAACCACACGCATACTGTCACTGTGACCACCGTAGGGGACCATGCGCACACTGTCACTGTTGCCGCTGCCGCAGACCACACCCACACGTTCACGGCCAGCACGGTAGCAGACCACACCCACACTATCACCGTCAACGCGGCAGGCGGCATCGAAACCCGCCCGCACAACTTCGCAGAGGTTGTGGCTATCCACATTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
13b79833bf8370854b9db8668ee455aadc6a01fc0488a7fa7c5fde9b5ac76f28
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7133
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50