Protein

View in Explore
Genbank accession
ABK91884.1 [GenBank]
Protein name
minor structural protein
RBP type
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MAIQTMEDAHTFHYFYVAQKFSDELTTLIGVQSGIEELRKSPVYDKRPKNAFARDVITDLLAGTNWQARFVGETNPHSTNFYYTSVFDALKKVCEVWDLEMQFFVEMNGNRIGARYIDFKQRIGEVVGKRVVYGHNALQILQEVERTNIFTALVGRGKGEETGDGYGRKITFEDVVWSRTQGKPVDKPKGQKYLELPLMTRQYGIKNADGSMRPKIGFVDFSEEENPEILIERTYKALIDAARPQLTLKTSSVYLRGVKVGDTIRVVRHDKKLDYDTRIFEITFNRLNNQSSDIKLGDRIGESNEAKVQTIADKAVEQFVNNEFSNFVQNLPDYLPSADGFNNNWYGVEDPTVKYPGKVLINDIWYKPDPEHEGHKIMLRWTGEVWEEILRNYESESLRDRIAEEIAQVNQSMQAQAQEHDRQVADIFSKTQSVESLANQAKSDAASALARANQVKTEAIADARAQVATVSQVLNTAKSELQSAIASADQKARDSQASATALRNDLNLQASKILEQARAQTALTNRVSTVETLADGTRSTVAELYKTLNKATGDIDSVTNRTKSVEDNLSQTRAQYEHLTQTVNAQTGQIDSINRKTVDLQSGIDGVTQRFEDLQIGGNNLLKNTKDFSGEWDYNGQRRKIAPWKYNGLSAIEVDYPWEGLTQLIQVRAGEVYTFSAYVASSLASDSAEIYIHLKNYHTEQMAVVDNYYRKFNMTATFQRVSITFKVITDGYIAPRIERSDLNGILYFAGMKLERGTIATDWSPSPEDATNYADTKIAEYKNTVDGRFATIQSSVDNKANLVDFQRVQETARLYERIIGSTETGIKDKVARMVMADSLFLTEVKDKISGTATQVSQLNNSYAIKNLTSAGTVLNQINLLANGTNRIDGRLTHITGQTLIDNGVIDNAMIGNLDAGKITTGTLDAARIKADSINGSKMVFDQAFVNKMTANEALFKQLFAQSAFITSVQAVAVSAKQIAGGIAKALNGGMDVNFDESKINFYTNVAAIRRIYTGHPTQFIKFETEGNYSRTIIGSNRNGGEVFNSATFAGIVVENTNNINTEDNVRIYGDNTLLRHAQGDVGWNINSVTQRIVPANINAESEIWSKHFVAPDKNLKPVRLDTAVAALWDIWNHIIYNNFEFNEALRTHIKARRDNWKFELNL
Physico‐chemical
properties
protein length:1161 AA
molecular weight: 130107,21490 Da
isoelectric point:5,93833
aromaticity:0,08786
hydropathy:-0,44651

Domains

Domains [InterPro]
DC_0904
STR
3–354
DC_0904 Coil G3DSA:2.60.120.260 IPR012892
IPR010572
ENZ
40–297
IPR010572
IPR007119
Unmapped
45–297
IPR007119
DC_1418
STR
258–1154
DC_1418
ABK91884.1
1 1161
Architecture
STR
STR 3-1154 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage SMP
[NCBI] 		413066 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus suis
[NCBI] 		1307 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABK91884.1 [NCBI]
Genbank nucleotide accession
EF116926 [NCBI]
CDS location
range 3077 -> 6562
strand +
CDS
ATGGCTATTCAGACCATGGAAGATGCACACACTTTCCATTATTTCTACGTGGCCCAGAAGTTTTCTGATGAGCTGACAACGCTGATTGGTGTTCAGTCGGGGATTGAGGAATTGCGCAAGTCGCCAGTCTATGACAAGCGTCCAAAGAATGCCTTTGCCCGTGATGTGATTACAGACTTACTTGCTGGTACCAACTGGCAAGCTCGTTTTGTTGGCGAAACCAATCCACACAGCACCAATTTCTACTACACGTCTGTTTTTGATGCCTTGAAAAAGGTCTGTGAAGTCTGGGACTTGGAAATGCAATTTTTCGTCGAGATGAATGGCAATCGCATCGGAGCCCGTTACATCGACTTTAAGCAACGAATCGGTGAGGTTGTCGGTAAGCGTGTGGTTTATGGGCACAATGCCTTGCAAATCTTACAAGAGGTGGAACGTACCAACATCTTTACTGCCCTGGTCGGACGTGGCAAGGGTGAGGAAACTGGTGACGGCTACGGTCGGAAAATCACATTTGAAGATGTGGTTTGGTCAAGGACACAAGGCAAACCAGTTGATAAGCCTAAAGGGCAGAAATACCTAGAATTGCCCTTGATGACACGGCAATATGGTATCAAGAACGCTGATGGCTCCATGCGTCCTAAAATCGGCTTTGTGGATTTTTCGGAAGAAGAGAATCCAGAAATCCTGATTGAGCGGACGTATAAGGCTTTAATTGATGCTGCACGTCCGCAGTTGACCTTGAAAACCTCCAGTGTCTATCTGAGAGGTGTCAAGGTTGGGGATACCATTCGAGTGGTTCGACATGACAAGAAATTGGATTATGATACTCGGATTTTCGAGATTACCTTTAACCGACTGAACAATCAATCCAGCGACATTAAGTTGGGTGACCGAATCGGCGAAAGTAACGAAGCCAAAGTTCAGACCATTGCGGACAAGGCTGTTGAGCAGTTTGTCAATAACGAGTTTTCGAACTTTGTCCAGAACTTACCTGATTATCTGCCGAGTGCAGACGGTTTTAACAATAACTGGTACGGTGTTGAAGACCCTACTGTCAAGTATCCAGGTAAAGTGCTGATCAATGATATTTGGTATAAGCCAGATCCAGAGCATGAGGGTCATAAGATTATGCTCAGATGGACAGGAGAAGTTTGGGAAGAAATCTTGAGGAACTATGAAAGCGAATCTTTGCGAGATAGGATTGCGGAAGAAATCGCCCAAGTCAACCAATCCATGCAAGCACAGGCACAGGAACACGACAGACAAGTCGCAGACATCTTTTCCAAGACTCAATCTGTCGAATCACTTGCCAACCAGGCAAAGTCGGATGCTGCTAGTGCATTGGCTAGAGCTAACCAGGTAAAGACCGAGGCTATCGCAGATGCAAGAGCGCAGGTTGCAACGGTTAGTCAGGTTTTAAATACTGCTAAGTCTGAGCTGCAGTCAGCAATCGCTAGTGCTGACCAAAAGGCTAGAGATAGCCAAGCAAGTGCCACAGCTTTGCGCAATGACCTCAACTTGCAAGCTAGCAAGATTTTGGAGCAAGCACGAGCACAGACGGCTTTGACCAATCGAGTGTCCACAGTCGAGACTTTGGCAGATGGTACCAGGTCAACAGTCGCAGAACTGTATAAAACGCTTAATAAAGCGACAGGAGACATCGACAGTGTTACTAATCGGACCAAGTCCGTCGAGGACAATCTGAGCCAAACTAGGGCACAATATGAGCATCTGACGCAGACTGTTAATGCTCAGACTGGTCAGATTGATAGCATCAATCGTAAGACCGTTGATTTGCAGAGCGGTATTGATGGTGTGACGCAAAGATTTGAGGATTTGCAGATTGGCGGAAACAATCTGCTAAAAAATACAAAAGATTTTAGTGGCGAATGGGACTATAATGGTCAGCGCAGAAAGATTGCTCCGTGGAAATACAATGGATTATCAGCTATCGAAGTTGACTATCCGTGGGAAGGCTTGACTCAACTTATACAAGTCAGGGCTGGCGAAGTGTATACATTCAGCGCCTATGTTGCATCTAGTCTTGCAAGTGATTCTGCTGAAATTTATATACATCTAAAAAATTATCATACAGAACAGATGGCTGTTGTTGATAATTATTACCGTAAATTTAATATGACCGCTACTTTTCAAAGGGTATCTATAACTTTTAAGGTTATTACCGATGGGTACATTGCTCCACGAATTGAGCGCAGTGATTTAAACGGTATCTTATATTTTGCGGGAATGAAGTTGGAACGCGGAACGATTGCGACTGACTGGTCTCCATCCCCTGAGGACGCTACGAACTACGCAGACACCAAAATTGCCGAGTACAAAAACACGGTTGACGGACGGTTTGCGACTATCCAATCCTCTGTCGATAATAAGGCAAATCTGGTCGATTTTCAGCGAGTGCAAGAGACAGCAAGGTTGTACGAGCGTATCATCGGCTCAACGGAAACTGGTATCAAGGATAAAGTAGCTCGCATGGTTATGGCTGATAGTCTGTTTCTAACCGAAGTAAAGGATAAGATTAGCGGTACGGCTACACAGGTTAGTCAGCTTAATAATTCGTACGCTATTAAAAATCTGACTAGTGCTGGTACAGTGCTTAACCAAATTAACTTACTGGCCAATGGTACCAACAGAATCGATGGTCGATTGACGCACATCACAGGCCAAACTTTGATTGACAATGGTGTTATCGACAATGCAATGATTGGCAATTTAGACGCTGGGAAAATCACAACTGGTACGCTGGATGCTGCGCGGATTAAAGCAGATAGTATCAATGGTAGTAAGATGGTATTTGACCAAGCGTTTGTTAATAAAATGACTGCAAACGAAGCCTTGTTTAAGCAGTTGTTTGCTCAAAGTGCATTTATCACAAGCGTCCAGGCAGTGGCTGTGTCAGCTAAGCAGATTGCTGGTGGTATTGCTAAGGCTCTCAACGGTGGTATGGATGTCAATTTCGACGAAAGCAAAATTAACTTTTACACAAACGTAGCTGCAATAAGACGTATCTATACTGGACACCCTACTCAATTTATAAAATTCGAAACCGAAGGGAATTACTCGCGAACAATCATCGGGAGCAATCGGAACGGAGGAGAAGTTTTTAATTCAGCAACATTTGCAGGGATTGTTGTAGAAAACACAAACAACATAAACACGGAAGACAATGTGCGGATTTATGGAGATAACACGCTATTAAGACATGCACAAGGCGATGTCGGTTGGAATATCAATTCCGTCACTCAACGTATAGTCCCTGCCAACATCAACGCAGAGTCCGAAATTTGGTCTAAGCACTTTGTCGCTCCAGATAAAAATTTGAAGCCTGTCCGACTGGATACAGCAGTGGCAGCGTTATGGGACATCTGGAATCACATTATTTACAATAATTTTGAGTTTAACGAAGCGCTTCGAACACACATAAAAGCTAGACGTGACAACTGGAAATTTGAATTAAATTTATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
b8eadac03162ea8cc7c068467f46f044b6e443cfc241269ebc871e6fa8968ef4
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3176
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and identification of a bacteriophage capable of infecting Streptococcus suis type 2 strains Ma,Y.L. and Lu,C.P. 2008 18676101 GenBank